View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1164_low_5 (Length: 583)
Name: NF1164_low_5
Description: NF1164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1164_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 23 - 582
Target Start/End: Original strand, 37004285 - 37004844
Alignment:
| Q |
23 |
atcatcaatacagtttacaaagcagctagagtgccaaaatatcatctatatattttcatttgaaattnnnnnnntaactgcaaagacgtggaagatgcta |
122 |
Q |
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| T |
37004285 |
atcatcaatacagtttacaaagcagctagagtgccaaaatatcatctatatattttcatttgaaattaaaaaaataactgcaaagacgtggaagatgcta |
37004384 |
T |
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| Q |
123 |
gtaaatctaaatattcgcaagtctaacagagacagaaacgacatggtattcaatcataaaaataatgtttattgtttgactgaacacaaaggggaagact |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004385 |
gtaaatctaaatattcgcaagtctaacagagacagaaacgacatggtattcaatcataaaaataatgtttattgtttgactgaacacaaaggggaagact |
37004484 |
T |
|
| Q |
223 |
gtgtttggtagctagaatcagagaagatagatcaattggttattttaataccctattataatccaatgtttgttaagtcaatgtgacacgataggataac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004485 |
gtgtttggtagctagaatcagagaagatagatcaattggttattttaataccctattataatccaatgtttgttaagtcaatgtgacacgataggataac |
37004584 |
T |
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| Q |
323 |
cctaccgagtaggcttgccctaatactaacatataccctaaggagctggatttaagatgaatgggatagtatattattttccctttccaccgttgtatgt |
422 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004585 |
cttaccgagtaggcttgccctaatactaacatataccctaaggagctggatttaagatgaatgggatagtatattattttccctttccaccgttgtatgt |
37004684 |
T |
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| Q |
423 |
gactccctctcccttctcctccatgacaacacacgctgccggataccttccaccacctccatccagcaccctccgccaattctaacaccttgagctgaag |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004685 |
gactccctctcccttctcctccatgacaacacacgctgccggataccttccaccacctccatccagcaccctccgccaattctaacaccttgagctgaag |
37004784 |
T |
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| Q |
523 |
ctgccacaaggtactcccgatcgccatctggcattatccaccacgacctatgctactcca |
582 |
Q |
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| T |
37004785 |
ctgccacaaggtactcccgatcgccacctggcattatccaccacgacctatgctattcca |
37004844 |
T |
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