View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_high_14 (Length: 372)

Name: NF11650_high_14
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_high_14
NF11650_high_14
[»] chr2 (8 HSPs)
chr2 (9-360)||(40059434-40059784)
chr2 (146-321)||(40077652-40077827)
chr2 (82-358)||(40085393-40085665)
chr2 (9-321)||(40085334-40085632)
chr2 (15-123)||(35056063-35056171)
chr2 (28-94)||(11344360-11344425)
chr2 (25-61)||(11513859-11513895)
chr2 (25-61)||(22681258-22681294)
[»] chr4 (2 HSPs)
chr4 (229-314)||(22015825-22015910)
chr4 (25-61)||(54327522-54327558)
[»] chr3 (1 HSPs)
chr3 (25-129)||(4534428-4534530)
[»] chr1 (2 HSPs)
chr1 (43-95)||(23370389-23370440)
chr1 (25-61)||(27738253-27738289)
[»] chr7 (6 HSPs)
chr7 (25-62)||(23918917-23918954)
chr7 (28-61)||(28178930-28178963)
chr7 (25-61)||(1417225-1417261)
chr7 (25-61)||(30456523-30456559)
chr7 (25-61)||(38010675-38010711)
chr7 (25-61)||(39591540-39591576)
[»] chr6 (2 HSPs)
chr6 (28-61)||(2205644-2205677)
chr6 (25-61)||(7713986-7714022)
[»] chr5 (1 HSPs)
chr5 (25-61)||(42181165-42181201)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 40059434 - 40059784
Alignment:
Q  9 taatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgctta 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  40059434 taatgaaa-ataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatgttgtaagtgctta 40059532  T
Q  109 ataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059533 ataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgat 40059632  T
Q  209 gagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatg 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059633 gggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatg 40059732  T
Q  309 ggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059733 ggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatct 40059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 146 - 321
Target Start/End: Original strand, 40077652 - 40077827
Alignment:
Q  146 taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtgg 245  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  40077652 taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg 40077751  T
Q  246 ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggt 321  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  40077752 ctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggt 40077827  T

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Target: chr2; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 82 - 358
Target Start/End: Original strand, 40085393 - 40085665
Alignment:
Q  82 taagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatga 181  Q
    |||| ||||||||| | ||||  |||||| ||||| |||||||||| ||| | |||||||||| |||| | |||||| ||||  ||||||| ||||||||    
T  40085393 taagcacttatatgttataagcacttaattaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatga 40085492  T
Q  182 aatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtc 281  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||    
T  40085493 aatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtc 40085592  T
Q  282 catatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcat 358  Q
    ||||||||||| |||||||||||||||||||||||||||    ||||||||||||  ||| ||||  ||||||||||    
T  40085593 catatgtttgttctgaatggaactatgggtaaagtttgg----taatttatgtgtattatatttcgagggtgttcat 40085665  T

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Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 40085334 - 40085632
Alignment:
Q  9 taatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgctta 108  Q
    |||||||||||| ||| |||||||||||||||||||  | |   |||||||||| ||||||            |||| ||||||||| | ||||  ||||    
T  40085334 taatgaaacatattaactatatgaaaacaatatgac--tctaaaatcttttgtaaatagaa------------taagcacttatatgttataagcactta 40085419  T
Q  109 ataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgat 208  Q
    || ||||| |||||||||| ||| | |||||||||| |||| | |||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  40085420 attaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatgaaatggatttttgcagtatgattttgat 40085519  T
Q  209 gagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatg 308  Q
    | |||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  40085520 gggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatg 40085619  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 35056063 - 35056171
Alignment:
Q  15 aacataataattatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaag 114  Q
    |||||| ||||||||||||| || ||||  |||||||||||||||||| ||||||| | | ||||  |||| ||||||||||| ||||   ||||| |||    
T  35056063 aacatattaattatatgaaaccagtatggttttgttttatcttttgtaaatagaaacaacgtatatataagcacttatatgctataagcaattaattaag 35056162  T
Q  115 tagtttatc 123  Q
    | |||||||    
T  35056163 ttgtttatc 35056171  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  28 tatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatat 94  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||||| ||| | |||| ||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgt-tatagaaatatcttatgcataagcacttatat 11344425  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11513895 - 11513859
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  11513895 ttatatgaaaacaatttgactttattttatcttttgt 11513859  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 22681258 - 22681294
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| || ||||||||||||||||||    
T  22681258 ttatatgaaaacaatttggctttgttttatcttttgt 22681294  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
Q  229 atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa 314  Q
    ||||||||||||||| || |  || ||  |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||    
T  22015910 atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa 22015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 54327522 - 54327558
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||| | |||||||||||||||||||||    
T  54327522 ttatatgaaaacagtttgactttgttttatcttttgt 54327558  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 4534428 - 4534530
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaagtagtttatcc 124  Q
    |||||| ||||||||  |||||| || |||||||| |  ||| ||||| | |||||||||| |||||||  || |||||||||||| |||| ||||||||    
T  4534428 ttatattaaaacaattcgactttattatatcttttatttatataaataacttatacgtaagcacttata--ctataagtgcttaattaagttgtttatcc 4534525  T
Q  125 aaaca 129  Q
    |||||    
T  4534526 aaaca 4534530  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 23370389 - 23370440
Alignment:
Q  43 actttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatg 95  Q
    |||||||||||||||||||| ||||||||| | |||||||||| |||||||||    
T  23370389 actttgttttatcttttgta-atagaaatagcttatacgtaagtacttatatg 23370440  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 27738253 - 27738289
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  27738253 ttatatgaaaacaatttgactttattttatcttttgt 27738289  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 23918954 - 23918917
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgta 62  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  23918954 ttatatgaaaacaatttgactttattttatcttttgta 23918917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 28178963 - 28178930
Alignment:
Q  28 tatgaaaacaatatgactttgttttatcttttgt 61  Q
    |||||||||||||||||||| |||||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgt 28178930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 1417261 - 1417225
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  1417261 ttatatgaaaacaatttgactttattttatcttttgt 1417225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 30456523 - 30456559
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  30456523 ttatatgaaaacaatttgactttattttatcttttgt 30456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 38010711 - 38010675
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| || ||||||||||||||||||    
T  38010711 ttatatgaaaacaatttggctttgttttatcttttgt 38010675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 39591540 - 39591576
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  39591540 ttatatgaaaacaatttgactttattttatcttttgt 39591576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 2205644 - 2205677
Alignment:
Q  28 tatgaaaacaatatgactttgttttatcttttgt 61  Q
    |||||||||||| |||||||||||||||||||||    
T  2205644 tatgaaaacaatttgactttgttttatcttttgt 2205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 7714022 - 7713986
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  7714022 ttatatgaaaacaatttgactttattttatcttttgt 7713986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 42181165 - 42181201
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    |||||||||||| || |||||||||||||||||||||    
T  42181165 ttatatgaaaaccatttgactttgttttatcttttgt 42181201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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