View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_high_16 (Length: 300)

Name: NF11650_high_16
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_high_16
NF11650_high_16
[»] chr8 (1 HSPs)
chr8 (19-300)||(7524540-7524821)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 7524540 - 7524821
Alignment:
Q  19 agctatattaacagaagtataaggaccaggtcctgaattacctgcagaacaagaaacaacaacaccatgttgtgcagcaccaaaagcaccaatagcaatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7524540 agctatattaacagaagtataaggaccaggtcctgaattacctgcagaacaagaaacaacaacaccatgttgtgcagcaccaaaagcaccgatagcaatc 7524639  T
Q  119 gaatcacgataataatgaggcgcataaccactagaaccaaccgaaagcgaaatcacatgaaccccatcagcaacagcttcatccatagcagcaagaatat 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524640 gaatcacgataataatgaggcgcataaccattagaaccaaccgaaagtgaaatcacatgaaccccatcagcaacagcttcatccatagcagcaagaatat 7524739  T
Q  219 cagaatcaaaacaaccaagtttccaacagattttataagcagcaattctagcttttgttgccattccctttgcttctcctct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  7524740 cagaatcaaaacaaccaagtttccaacagattttataagcagcaattctagcttttgttgccattcccttagcttcgcctct 7524821  T

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