View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_high_18 (Length: 266)

Name: NF11650_high_18
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_high_18
NF11650_high_18
[»] chr5 (4 HSPs)
chr5 (8-247)||(19151802-19152032)
chr5 (65-173)||(14460526-14460634)
chr5 (38-112)||(7333533-7333607)
chr5 (92-176)||(40803031-40803114)
[»] chr6 (3 HSPs)
chr6 (39-175)||(19143974-19144110)
chr6 (42-175)||(19101695-19101828)
chr6 (65-135)||(5090878-5090949)
[»] chr7 (1 HSPs)
chr7 (38-172)||(12818168-12818305)
[»] chr2 (5 HSPs)
chr2 (65-176)||(4789611-4789722)
chr2 (42-175)||(24314628-24314761)
chr2 (65-176)||(10733452-10733563)
chr2 (65-173)||(1979584-1979692)
chr2 (115-176)||(42436018-42436079)
[»] chr3 (1 HSPs)
chr3 (65-173)||(8354524-8354632)
[»] chr1 (1 HSPs)
chr1 (67-176)||(18548274-18548383)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 19151802 - 19152032
Alignment:
Q  8 gagcacagacacctctctctaaagcaatgacaccggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttcc 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19151802 gagcacagacacctctctctaaagcaatgacgccggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttcc 19151901  T
Q  108 accatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaacgaacatccatgccggtattttaacatcctatagaacctatag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         |||||||    
T  19151902 accatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaacgaacatccatgctggtattttaacat---------cctatag 19151992  T
Q  208 aacctaactacactaactagagagtaactaactctaatta 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19151993 aacctaactacactaactagagagtaactaactctaatta 19152032  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 14460526 - 14460634
Alignment:
Q  65 aagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaa 164  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||||| |||||| |||||||| | |||||  |||    
T  14460526 aagtaaatacaccattggataagcaatatgtcttctagtttccaccatctttcttgaaagatcactaatcccatctaaattagaaaactgttcacatgaa 14460625  T
Q  165 cgaacatcc 173  Q
    |||| ||||    
T  14460626 cgaatatcc 14460634  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 7333607 - 7333533
Alignment:
Q  38 caccggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttccaccat 112  Q
    ||||| |||||||| ||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7333607 caccgacaaaagcagtgataactttaaaagtaaatataccattggataaacaacatgttttcttgtttccaccat 7333533  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 40803031 - 40803114
Alignment:
Q  92 atgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaacgaacatccatg 176  Q
    ||||||||| |||||||| | |||||||||||||| |||||||| | | || |||||| ||| || || | ||||||||||||||    
T  40803031 atgttttctagtttccacaaacattcttgaaagatcactaatcccacccaaattagaacattgttgac-aaaacgaacatccatg 40803114  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 19143974 - 19144110
Alignment:
Q  39 accggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctat 138  Q
    |||| ||||| ||| |||||||||| ||||||||||| |||||||| | ||| || ||||||| |||||||||| ||| ||||||||| | |||||| ||    
T  19143974 accgacaaaaacaacgacaactttataagtaaatacatcattggatgaacaatatattttcttatttccaccataatttttgaaagatcattaatcccat 19144073  T
Q  139 ctaagttagaaaattattcactagaacgaacatccat 175  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19144074 ctaagttagaaaattgttcactagaacgaacatccat 19144110  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 175
Target Start/End: Complemental strand, 19101828 - 19101695
Alignment:
Q  42 ggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatcta 141  Q
    ||||||| ||| |||||||||| ||||||||||| |||||||| | ||| || ||||||| |||||||||| ||| ||||||||| | |||| | |||||    
T  19101828 ggcaaaaacaacgacaactttataagtaaatacatcattggatgaacaatatattttcttatttccaccataatttttgaaagatcattaattccatcta 19101729  T
Q  142 agttagaaaattattcactagaacgaacatccat 175  Q
     ||||||||||| |||||||||||||||||||||    
T  19101728 cgttagaaaattgttcactagaacgaacatccat 19101695  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 5090878 - 5090949
Alignment:
Q  65 aagtaaatacaccattggataagcaacatgttttctt-gtttccaccatcattcttgaaagattactaatcc 135  Q
    ||||||||||||||||| |||| ||| ||||||| || |||||||||| |||||||||| ||| ||||||||    
T  5090878 aagtaaatacaccattgcataaacaatatgtttttttagtttccaccaacattcttgaatgatcactaatcc 5090949  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 12818305 - 12818168
Alignment:
Q  38 caccggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatccta 137  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||||||| ||| || ||||||||||||||| ||||||| |||||||| |||||||  |    
T  12818305 caccgacaaaagcaatgataactttagaagtaaatgcaccattggataaacaatatattttcttgtttccacgatcattcgtgaaagatcactaatctca 12818206  T
Q  138 tcta---agttagaaaattattcactagaacgaacatc 172  Q
    ||||   | |||||||||||||||||| ||||||||||    
T  12818205 tctaaataattagaaaattattcactaaaacgaacatc 12818168  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 4789611 - 4789722
Alignment:
Q  65 aagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaa 164  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||| ||||||||||||||| |||||||| | |||||  |||    
T  4789611 aagtaaatacaccattggataagcaatatgtcttctagtttccaccatctttcttgaaagatcactaatcctatctaaattagaaaactgttcacatgaa 4789710  T
Q  165 cgaacatccatg 176  Q
    ||||||||||||    
T  4789711 cgaacatccatg 4789722  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 24314628 - 24314761
Alignment:
Q  42 ggcaaaagcaatgacaactttagaagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatcta 141  Q
    ||||||| ||| |||||||||| ||||||||||| |||||| | | ||| || ||||||| |||||||||| ||| ||||||||| | |||||| |||||    
T  24314628 ggcaaaaacaacgacaactttataagtaaatacatcattggttgaacaatatattttcttatttccaccataatttttgaaagatcattaatcccatcta 24314727  T
Q  142 agttagaaaattattcactagaacgaacatccat 175  Q
    |||||||||||| |||||||||||||||||||||    
T  24314728 agttagaaaattgttcactagaacgaacatccat 24314761  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 10733563 - 10733452
Alignment:
Q  65 aagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaa 164  Q
    |||||||||||||||| ||||||||| |||| |||| |||||||||||| |||||||||||| |||||||| |||||| |||||||| | |||||  |||    
T  10733563 aagtaaatacaccattagataagcaatatgtcttctagtttccaccatctttcttgaaagatcactaatcccatctaaattagaaaactgttcacatgaa 10733464  T
Q  165 cgaacatccatg 176  Q
    ||||||||||||    
T  10733463 cgaacatccatg 10733452  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 1979692 - 1979584
Alignment:
Q  65 aagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaa 164  Q
    |||||||||||||||||||||| ||| |||| |||| |||||||||||| |||||||||||| |||||||| |||||| |||||||| | |||||  |||    
T  1979692 aagtaaatacaccattggataaacaatatgtcttctagtttccaccatctttcttgaaagatcactaatcccatctaaattagaaaactgttcacatgaa 1979593  T
Q  165 cgaacatcc 173  Q
    |||||||||    
T  1979592 cgaacatcc 1979584  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 42436079 - 42436018
Alignment:
Q  115 ttcttgaaagattactaatcctatctaagttagaaaattattcactagaacgaacatccatg 176  Q
    |||||||||||| |||||||  |||||| ||| |||||||||||| ||||| ||||||||||    
T  42436079 ttcttgaaagatcactaatctcatctaaattacaaaattattcacaagaactaacatccatg 42436018  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 8354524 - 8354632
Alignment:
Q  65 aagtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaa 164  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||||| |||||| |||||||| | ||||| ||||    
T  8354524 aagtaaatacaccattggataagcaatatgtcttctagtttccaccatctttcttgaaagatcactaatcccatctaaattagaaaactgttcacaagaa 8354623  T
Q  165 cgaacatcc 173  Q
    |||||||||    
T  8354624 cgaacatcc 8354632  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 18548274 - 18548383
Alignment:
Q  67 gtaaatacaccattggataagcaacatgttttcttgtttccaccatcattcttgaaagattactaatcctatctaagttagaaaattattcactagaacg 166  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||||| |||| |||||||||| | |||||  |||||    
T  18548274 gtaaatacaccattggataagcaatatgtcttctagtttccaccatctttcttgaaagatcactaatcccatcttagttagaaaactgttcacatgaacg 18548373  T
Q  167 aacatccatg 176  Q
    ||||||||||    
T  18548374 aacatccatg 18548383  T

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