View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_high_24 (Length: 236)
Name: NF11650_high_24
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 3332487 - 3332260
Alignment:
| Q |
12 |
cacaattgaccaaactttgtattcatatgtgttcatttatctgtcttctttagagccgaatccgctattttaacatttctcaaataggttgtaaacatac |
111 |
Q |
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| T |
3332487 |
cacaattgaccgaactttgtattcatatgtgtttatttatctgtcttctttagagccgaatttgctattttaacatttctcaaataggttgtaaacatac |
3332388 |
T |
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| Q |
112 |
aaaataacatcacactcttccccaccaatt---nnnnnnnnttaaagtaaaatgagttcaataaactttttgttcacaaatttgttatttacattcatac |
208 |
Q |
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| T |
3332387 |
aaaataacatcacactcttccccaccaattaagaaaaaaaattaaagtaaaatgagttcaataaactttttgttcacaaatttgttatttacattcatac |
3332288 |
T |
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| Q |
209 |
caaagcatgaccttacctccattaagcc |
236 |
Q |
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| T |
3332287 |
caaagcatgaccttacctccattaagcc |
3332260 |
T |
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