View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_high_8 (Length: 451)
Name: NF11650_high_8
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 46981408 - 46980967
Alignment:
| Q |
10 |
gcagagacaaattcctattatacaacttagggatgatgagaagttggtttatcatgaaccaaagcttatttggaacatggtatgcagagtctgtaaaaca |
109 |
Q |
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| T |
46981408 |
gcagagacaaattcctattatacaacttagggatgatgagaagttggtttatcatgaaccaaaacttatttggaacatggtatgcagagtctgtaaaaca |
46981309 |
T |
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| Q |
110 |
cgaggctcaattttctgcagtcctctctgtcttgggtttttattttcatccggtggaggtgaggggtaattatcaaccaaaactaggtaaataaatttca |
209 |
Q |
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| T |
46981308 |
cgaggctcaattttctgcagtcctctctgtcttgggtttttattttcatccggtggaggtgaggggtaattatcaaccaaaactaggtaaataaatttca |
46981209 |
T |
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| Q |
210 |
catgacaaacgaatagaaagacagaagtttgatcagtatatttgctacaaaagaatttactactcccatgcaatctggttctttggggtttgaaatagtg |
309 |
Q |
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| T |
46981208 |
catgacaaaagaatagaaagacagaagtttgatcagtatctttgctacaaaagaatttactattcccatgcaatctggttctttggggtttgaaatagtg |
46981109 |
T |
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| Q |
310 |
gtttctacattctggaagattgctacaaaaattcttcagcagtattcagataatctaatatttcagacttaacttccttcggcagtggtgctgatggacc |
409 |
Q |
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| T |
46981108 |
gtttctacattctggaagattgctacaaaaattcttcagcagtattcagataatctaatatttcagacttaacttccttcggcagtggtgctgatggccc |
46981009 |
T |
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| Q |
410 |
tgcctttgagtaaaagtttgccaaagatcttactgcttttac |
451 |
Q |
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| T |
46981008 |
tgcctttgagtaaaagtttgccaaagatcttactgcttttac |
46980967 |
T |
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