View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_10 (Length: 413)
Name: NF11650_low_10
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 32815210 - 32815597
Alignment:
| Q |
1 |
tattgttccaagagagttcaaactttggtctcatttattcacctttaaaggtgaatgaatatcttgttgtcactggagtgcttgattaaaataaaaaatc |
100 |
Q |
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| T |
32815210 |
tattgttccaagagagttcaaactttggtctcatttattcacctttaaaggtgaat----atcttgttgtcactagagtgcttgattaaaataaaaaatc |
32815305 |
T |
|
| Q |
101 |
cttatttcaaatgaagggaatcaaatactccatcacaaaagnnnnnnnnnnnnnn-----aagagtatatacatgcattaacttaattgttagacactct |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32815306 |
cttatttcaaatgaagggaatcaaatactccatcacaaaagttttttattttgttgagccaagagtatatacatgcattaacttaattgttagacactct |
32815405 |
T |
|
| Q |
196 |
agtctacctagattcacacccctaactaacaaacatactttgcaattcataatatcatatattggtcataaaggttaccgtcatcattcactttaaaaaa |
295 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815406 |
agtctacctagattcaca----------------atactttgcaattcataatatcatatattggtcataaaggttaccgtcatcattcactttaaaaaa |
32815489 |
T |
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| Q |
296 |
tacatttcgtagtttaagttatctagtgtggttaactaacttgtcataaaaatacgtggtttaagttgttattttgtggcacaattgatactatagatta |
395 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815490 |
tacatttcgtagtttaagtgatctagtgtggttaactaacttgtcataaaaatacgtggtttaagttgttattttgtggcacaattgatactatagatta |
32815589 |
T |
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