View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_11 (Length: 400)

Name: NF11650_low_11
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_11
NF11650_low_11
[»] chr5 (2 HSPs)
chr5 (1-352)||(19151405-19151754)
chr5 (5-82)||(14460365-14460443)
[»] chr2 (6 HSPs)
chr2 (9-84)||(24314488-24314564)
chr2 (5-82)||(1979775-1979853)
chr2 (3-82)||(10733644-10733724)
chr2 (5-82)||(16107580-16107658)
chr2 (201-246)||(24314406-24314451)
chr2 (5-80)||(4789453-4789528)
[»] chr1 (1 HSPs)
chr1 (5-82)||(18548111-18548189)
[»] chr7 (1 HSPs)
chr7 (20-84)||(12818375-12818440)
[»] chr6 (5 HSPs)
chr6 (19-82)||(7732880-7732941)
chr6 (201-246)||(19102005-19102050)
chr6 (201-246)||(19143755-19143800)
chr6 (9-84)||(19101892-19101968)
chr6 (274-314)||(19104470-19104510)
[»] chr3 (2 HSPs)
chr3 (278-314)||(39708621-39708657)
chr3 (5-82)||(8354363-8354441)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 19151754 - 19151405
Alignment:
Q  1 ctattgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaatatgagaatgatatatttgatagtgttgagatnnnnnnntcattcaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  19151754 ctattgcgcaaccgtattggagatgaatttttgaatggttgtctagtaacaaatatgagaatgatatatttgatagtgttgagataaaaaaatcattcaa 19151655  T
Q  101 cactgtcaaaatatgaagtgaagagcaactatagtttttagaatttaagatttctttcactttttgacatacaaaggtaaannnnnnnngtaatatctag 200  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||        ||||||||||     
T  19151654 cactttcaaaatatgaagtgaagagcaactatagtttttagattttaagatttctttcactttttgacgtacaaaggtaaatttttt--gtaatatctaa 19151557  T
Q  201 cttcttaatgataatgatactgccattttatctcctatgctttatagttttttaataaatgttgatgatgataaattacattgaccccgcttattagaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19151556 cttcttaatgataatgatactgccattttatctcctatgctttatatttttttaataaatgttgatgatgataaattacactgaccccgcttattagaat 19151457  T
Q  301 ttctggatccgtccttgggtgtaaacttttacaatgatattgtatatgaatt 352  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19151456 ttctggatccgtccttgggtgtaaacttttacaatgacattgtatatgaatt 19151405  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 14460443 - 14460365
Alignment:
Q  5 tgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaata-tgagaatgatatatttgatagtgttga 82  Q
    |||||||| |||| |||||||| ||||||||||||||| | |||||| | | ||||| |||||||||||||||||||||    
T  14460443 tgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttga 14460365  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 24314564 - 24314488
Alignment:
Q  9 caactgtattggagatgaatttttgaatggttgtctagtaacaaatatga-gaatgatatatttgatagtgttgaga 84  Q
    |||| ||||| ||| ||||||||| ||||||||||||||||||  ||| | ||||||||||||||||||||||||||    
T  24314564 caaccgtattagaggtgaattttttaatggttgtctagtaacatttatcaagaatgatatatttgatagtgttgaga 24314488  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 1979775 - 1979853
Alignment:
Q  5 tgcgcaactgtattggagatgaatttttgaatggttgtctagtaaca-aatatgagaatgatatatttgatagtgttga 82  Q
    |||||||| |||| |||||||| ||||||||||||||| | |||||| | | ||||| |||||||||||||||||||||    
T  1979775 tgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatactttgagagtgatatatttgatagtgttga 1979853  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10733644 - 10733724
Alignment:
Q  3 attgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaata-tgagaatgatatatttgatagtgttga 82  Q
    |||||||||| |||| |||||||| ||||||||||||||| | |||||| | | ||||| |||||||||| ||||||||||    
T  10733644 attgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatattttatagtgttga 10733724  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 16107658 - 16107580
Alignment:
Q  5 tgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaatat-gagaatgatatatttgatagtgttga 82  Q
    |||||| | |||| |||||||| |||||||||| |||| | |||||| | || |||| |||||||||||||||||||||    
T  16107658 tgcgcagccgtatgggagatgagtttttgaatgattgtttggtaacatagattgagagtgatatatttgatagtgttga 16107580  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 24314451 - 24314406
Alignment:
Q  201 cttcttaatgataatgatactgccattttatctcctatgctttata 246  Q
    |||||||||||||| |||| |  |||||||||||||||||||||||    
T  24314451 cttcttaatgataaagatattatcattttatctcctatgctttata 24314406  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 4789528 - 4789453
Alignment:
Q  5 tgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaatat-gagaatgatatatttgatagtgtt 80  Q
    |||||||| |||| |||||||| |||| |||||||||| | |||||| | || |||| |||||||||||||||||||    
T  4789528 tgcgcaaccgtatgggagatgagtttt-gaatggttgtttggtaacatacattgagagtgatatatttgatagtgtt 4789453  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 18548189 - 18548111
Alignment:
Q  5 tgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaata-tgagaatgatatatttgatagtgttga 82  Q
    |||||||| |||| |||||||| ||||||||||||||| | |||||| | | ||||| |||||||||||||||||||||    
T  18548189 tgcgcaaccgtatgggagatgagtttttgaatggttgtttggtaacatacattgagagtgatatatttgatagtgttga 18548111  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 12818375 - 12818440
Alignment:
Q  20 gagatgaatttttgaatggttgtctagtaacaaatat-gagaatgatatatttgatagtgttgaga 84  Q
    |||||||||||||||||||||||||||||||| |||| || | ||| ||||||||| |||||||||    
T  12818375 gagatgaatttttgaatggttgtctagtaacatatatagaaagtgaaatatttgatggtgttgaga 12818440  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 7732941 - 7732880
Alignment:
Q  19 ggagatgaatttttgaatggttgtctagtaacaaatatgagaatgatatatttgatagtgttga 82  Q
    |||||||| ||||||||||||||| | ||||||  ||||||| |||||||||||||||||||||    
T  7732941 ggagatgagtttttgaatggttgtttggtaaca--tatgagagtgatatatttgatagtgttga 7732880  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 19102005 - 19102050
Alignment:
Q  201 cttcttaatgataatgatactgccattttatctcctatgctttata 246  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  19102005 cttcttaatgataatgatattatcattttatctcctatgctttata 19102050  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 19143800 - 19143755
Alignment:
Q  201 cttcttaatgataatgatactgccattttatctcctatgctttata 246  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  19143800 cttcttaatgataatgatattatcattttatctcctatgctttata 19143755  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 19101892 - 19101968
Alignment:
Q  9 caactgtattggagatgaatttttgaatggttgtctagtaacaaatatga-gaatgatatatttgatagtgttgaga 84  Q
    |||| ||||| ||| ||||||||| |||| |||| ||||||||  ||| | ||||||||||||||||||||||||||    
T  19101892 caaccgtattagaggtgaattttttaatgattgtttagtaacatttatcaagaatgatatatttgatagtgttgaga 19101968  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 19104470 - 19104510
Alignment:
Q  274 aattacattgaccccgcttattagaatttctggatccgtcc 314  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  19104470 aattacattgaccccgctgatcaaaatttctggatccgtcc 19104510  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 39708621 - 39708657
Alignment:
Q  278 acattgaccccgcttattagaatttctggatccgtcc 314  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39708621 acattgaccccgcttattaaaatttctggatccgtcc 39708657  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 8354441 - 8354363
Alignment:
Q  5 tgcgcaactgtattggagatgaatttttgaatggttgtctagtaacaaatat-gagaatgatatatttgatagtgttga 82  Q
    |||||||| |||| |||||| | ||||||||||||||  | |||||| | || |||| |||||||||||||||||||||    
T  8354441 tgcgcaaccgtatgggagatcagtttttgaatggttgcttggtaacatacattgagagtgatatatttgatagtgttga 8354363  T

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