View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_12 (Length: 389)

Name: NF11650_low_12
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_12
NF11650_low_12
[»] chr4 (2 HSPs)
chr4 (14-158)||(52550558-52550702)
chr4 (247-373)||(52550744-52550869)
[»] chr1 (2 HSPs)
chr1 (172-279)||(5229498-5229605)
chr1 (181-257)||(7344393-7344469)
[»] chr8 (1 HSPs)
chr8 (181-274)||(5450729-5450822)
[»] chr2 (7 HSPs)
chr2 (16-89)||(17124572-17124645)
chr2 (185-278)||(17124361-17124454)
chr2 (202-274)||(40059109-40059181)
chr2 (202-274)||(40085047-40085119)
chr2 (14-66)||(42989954-42990006)
chr2 (181-275)||(42990163-42990257)
chr2 (202-274)||(40077137-40077209)
[»] chr5 (1 HSPs)
chr5 (227-274)||(9642493-9642540)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 52550558 - 52550702
Alignment:
Q  14 agatgaacataaagcccagcttgttgcaccaccttgatgaacttaaccaaatcgtacctatcttcaaaataatactaaatttttgtacataaaaaattga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550558 agatgaacataaagcccagcttgttgcaccaccttgatgaacttaaccaaatcgtacctatcttcaaaataatactaaatttttgtacataaaaaattga 52550657  T
Q  114 attacctttctttttaacattttgacaaatgaaactaaattcaaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52550658 attacctttctttttaacattttgacaaatgaaactaaattcaaa 52550702  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 247 - 373
Target Start/End: Original strand, 52550744 - 52550869
Alignment:
Q  247 gccttttgaataaggtctggccacatctgcatttatccaaatgcaattaagatatataaatgttatttatttaaagaataacaattttgatgcagcatat 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550744 gccttttgaataaggtctggccacatctgcatttatccaaatgcaattaagatatataaatgttatttatttaaagaataacaattttgatgcagcatat 52550843  T
Q  347 agaatataaaatattacctcaggtgta 373  Q
    ||||||| |||||||||||||||||||    
T  52550844 agaatat-aaatattacctcaggtgta 52550869  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 5229605 - 5229498
Alignment:
Q  172 attacatgtccaggagaaggctcatgtccattccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccaca 271  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| ||||| |||||||| | |||||||||||||||||||||||  | |||||||||||    
T  5229605 attacatttccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaaataagtctggccaca 5229506  T
Q  272 tctgcatt 279  Q
    ||||||||    
T  5229505 tctgcatt 5229498  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 7344469 - 7344393
Alignment:
Q  181 ccaggagaaggctcatgtccattccagaacacataagtttgtataacatctaagcctccatctttagccttttgaat 257  Q
    ||||||||||| |||||  ||||||| ||||||||||| |  ||||||||||| ||||||||||| || ||||||||    
T  7344469 ccaggagaaggttcatgaacattccaaaacacataagtatcaataacatctaaccctccatcttttgctttttgaat 7344393  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 5450822 - 5450729
Alignment:
Q  181 ccaggagaaggctcatgtccattccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccacatct 274  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||| || ||||| || ||||| ||||||||||| || ||||| |||||||||||||    
T  5450822 ccaggtgaaggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagccttctggataagatctggccacatct 5450729  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 17124645 - 17124572
Alignment:
Q  16 atgaacataaagcccagcttgttgcaccaccttgatgaacttaaccaaatcgtacctatcttcaaaataatact 89  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||| ||  | ||||||||||| |||||||    
T  17124645 atgaacataaagtccagcttgttgaaccactttgatgaacttaaccaagtcaaatctatcttcaaagtaatact 17124572  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 17124454 - 17124361
Alignment:
Q  185 gagaaggctcatgtccattccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccacatctgcat 278  Q
    ||||||| |||||||||||||| || ||||| ||||  || ||||| |  |||||||||||||||||||| || |  |||||||||||||||||    
T  17124454 gagaaggttcatgtccattccaaaatacataggtttcaatcacatcaacacctccatctttagccttttgtattaaatctggccacatctgcat 17124361  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 40059181 - 40059109
Alignment:
Q  202 ttccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccacatct 274  Q
    |||||||| ||||| ||||  |||||||| |  |||||||||||||  || ||||||||||||||||||||||    
T  40059181 ttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatct 40059109  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 40085119 - 40085047
Alignment:
Q  202 ttccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccacatct 274  Q
    |||||||| ||||| ||||  |||||||| |  |||||||||||||  || ||||||||||||||||||||||    
T  40085119 ttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatct 40085047  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 42989954 - 42990006
Alignment:
Q  14 agatgaacataaagcccagcttgttgcaccaccttgatgaacttaaccaaatc 66  Q
    |||||||||||||| |||||||| ||||||| ||| |||||||| ||||||||    
T  42989954 agatgaacataaagaccagcttgctgcaccaactttatgaacttcaccaaatc 42990006  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 42990163 - 42990257
Alignment:
Q  181 ccaggagaaggctcatgtccattccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccacatctg 275  Q
    ||||| ||||| |||||||||||||| || |||||||| || || ||||| || || || || ||||| || || ||||| ||||||||||||||    
T  42990163 ccaggtgaaggttcatgtccattccaaaaaacataagtctgaatcacatccaaaccaccttccttagctttctgtataagatctggccacatctg 42990257  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 40077209 - 40077137
Alignment:
Q  202 ttccagaacacataagtttgtataacatctaagcctccatctttagccttttgaataaggtctggccacatct 274  Q
    |||||||| ||||| ||||  || ||||| |  |||||||||||||  || ||||||||||||||||||||||    
T  40077209 ttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccacatct 40077137  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 9642540 - 9642493
Alignment:
Q  227 catctaagcctccatctttagccttttgaataaggtctggccacatct 274  Q
    |||||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  9642540 catctaggccaccatctttggccttttgaataaggtcaggccacatct 9642493  T

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