View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_13 (Length: 381)
Name: NF11650_low_13
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 361572 - 361205
Alignment:
| Q |
14 |
gttagaaatttattgaatataatcacatgtgtatatagttgtcgtattagtgtcggagaccataatgaagtgtatatgttccaactaattagctacctaa |
113 |
Q |
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| T |
361572 |
gttaaaaatttattgaatataatcacatgtgtatatagttgtcgtattagtgttggagaccatgatgaagtgtatatgtttcaactaattagctacctaa |
361473 |
T |
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| Q |
114 |
caatttagcattgacacatcacaaatcatattgaagatatgtctagtgttcgaaaataatgacacgaaattttcacatgtagtttttcggttacaatata |
213 |
Q |
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| T |
361472 |
caatttagcattgacacatcacaaatcatattgaagatatgtctagtgttggaaaataatgacacgaaattttcacatgtagtttttcggttacaatata |
361373 |
T |
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| Q |
214 |
tgctaatttaaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactcactatggcaactag |
313 |
Q |
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| T |
361372 |
tgctaatttaaatctatatatttgtatttgtaaaggattccagggatttcagtgattttagtgtcatggcttgtgacattttactcactgtggcaactag |
361273 |
T |
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| Q |
314 |
tgcaaatgcaagaattgggtccagggaagagatttggtagatactttgatttaggcgaacatgtattt |
381 |
Q |
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| T |
361272 |
tgcaaatgcatgaattggttccagggaagagatttgatagatactttgatttaggagaacatgtattt |
361205 |
T |
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