View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_14 (Length: 372)

Name: NF11650_low_14
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_14
NF11650_low_14
[»] chr2 (8 HSPs)
chr2 (9-360)||(40059434-40059784)
chr2 (146-321)||(40077652-40077827)
chr2 (82-358)||(40085393-40085665)
chr2 (9-321)||(40085334-40085632)
chr2 (15-123)||(35056063-35056171)
chr2 (28-94)||(11344360-11344425)
chr2 (25-61)||(11513859-11513895)
chr2 (25-61)||(22681258-22681294)
[»] chr4 (2 HSPs)
chr4 (229-314)||(22015825-22015910)
chr4 (25-61)||(54327522-54327558)
[»] chr3 (1 HSPs)
chr3 (25-129)||(4534428-4534530)
[»] chr1 (2 HSPs)
chr1 (43-95)||(23370389-23370440)
chr1 (25-61)||(27738253-27738289)
[»] chr7 (6 HSPs)
chr7 (25-62)||(23918917-23918954)
chr7 (28-61)||(28178930-28178963)
chr7 (25-61)||(1417225-1417261)
chr7 (25-61)||(30456523-30456559)
chr7 (25-61)||(38010675-38010711)
chr7 (25-61)||(39591540-39591576)
[»] chr6 (2 HSPs)
chr6 (28-61)||(2205644-2205677)
chr6 (25-61)||(7713986-7714022)
[»] chr5 (1 HSPs)
chr5 (25-61)||(42181165-42181201)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 40059434 - 40059784
Alignment:
Q  9 taatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgctta 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  40059434 taatgaaa-ataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttatatgttgtaagtgctta 40059532  T
Q  109 ataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059533 ataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgat 40059632  T
Q  209 gagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatg 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059633 gggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatg 40059732  T
Q  309 ggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059733 ggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatct 40059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 146 - 321
Target Start/End: Original strand, 40077652 - 40077827
Alignment:
Q  146 taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtgg 245  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  40077652 taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg 40077751  T
Q  246 ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggt 321  Q
    ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  40077752 ctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggt 40077827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 82 - 358
Target Start/End: Original strand, 40085393 - 40085665
Alignment:
Q  82 taagaacttatatgctgtaagtgcttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatga 181  Q
    |||| ||||||||| | ||||  |||||| ||||| |||||||||| ||| | |||||||||| |||| | |||||| ||||  ||||||| ||||||||    
T  40085393 taagcacttatatgttataagcacttaattaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatga 40085492  T
Q  182 aatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtc 281  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||    
T  40085493 aatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtc 40085592  T
Q  282 catatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcat 358  Q
    ||||||||||| |||||||||||||||||||||||||||    ||||||||||||  ||| ||||  ||||||||||    
T  40085593 catatgtttgttctgaatggaactatgggtaaagtttgg----taatttatgtgtattatatttcgagggtgttcat 40085665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 40085334 - 40085632
Alignment:
Q  9 taatgaaacataataattatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgctta 108  Q
    |||||||||||| ||| |||||||||||||||||||  | |   |||||||||| ||||||            |||| ||||||||| | ||||  ||||    
T  40085334 taatgaaacatattaactatatgaaaacaatatgac--tctaaaatcttttgtaaatagaa------------taagcacttatatgttataagcactta 40085419  T
Q  109 ataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgat 208  Q
    || ||||| |||||||||| ||| | |||||||||| |||| | |||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  40085420 attaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatgaaatggatttttgcagtatgattttgat 40085519  T
Q  209 gagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatg 308  Q
    | |||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  40085520 gggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatg 40085619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 35056063 - 35056171
Alignment:
Q  15 aacataataattatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaag 114  Q
    |||||| ||||||||||||| || ||||  |||||||||||||||||| ||||||| | | ||||  |||| ||||||||||| ||||   ||||| |||    
T  35056063 aacatattaattatatgaaaccagtatggttttgttttatcttttgtaaatagaaacaacgtatatataagcacttatatgctataagcaattaattaag 35056162  T
Q  115 tagtttatc 123  Q
    | |||||||    
T  35056163 ttgtttatc 35056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  28 tatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatat 94  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||||| ||| | |||| ||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgt-tatagaaatatcttatgcataagcacttatat 11344425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11513895 - 11513859
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  11513895 ttatatgaaaacaatttgactttattttatcttttgt 11513859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 22681258 - 22681294
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| || ||||||||||||||||||    
T  22681258 ttatatgaaaacaatttggctttgttttatcttttgt 22681294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
Q  229 atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa 314  Q
    ||||||||||||||| || |  || ||  |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||    
T  22015910 atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa 22015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 54327522 - 54327558
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||| | |||||||||||||||||||||    
T  54327522 ttatatgaaaacagtttgactttgttttatcttttgt 54327558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 4534428 - 4534530
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatgctgtaagtgcttaataaagtagtttatcc 124  Q
    |||||| ||||||||  |||||| || |||||||| |  ||| ||||| | |||||||||| |||||||  || |||||||||||| |||| ||||||||    
T  4534428 ttatattaaaacaattcgactttattatatcttttatttatataaataacttatacgtaagcacttata--ctataagtgcttaattaagttgtttatcc 4534525  T
Q  125 aaaca 129  Q
    |||||    
T  4534526 aaaca 4534530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 23370389 - 23370440
Alignment:
Q  43 actttgttttatcttttgtacatagaaatatcatatacgtaagaacttatatg 95  Q
    |||||||||||||||||||| ||||||||| | |||||||||| |||||||||    
T  23370389 actttgttttatcttttgta-atagaaatagcttatacgtaagtacttatatg 23370440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 27738253 - 27738289
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  27738253 ttatatgaaaacaatttgactttattttatcttttgt 27738289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 23918954 - 23918917
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgta 62  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  23918954 ttatatgaaaacaatttgactttattttatcttttgta 23918917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 28178963 - 28178930
Alignment:
Q  28 tatgaaaacaatatgactttgttttatcttttgt 61  Q
    |||||||||||||||||||| |||||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgt 28178930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 1417261 - 1417225
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  1417261 ttatatgaaaacaatttgactttattttatcttttgt 1417225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 30456523 - 30456559
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  30456523 ttatatgaaaacaatttgactttattttatcttttgt 30456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 38010711 - 38010675
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| || ||||||||||||||||||    
T  38010711 ttatatgaaaacaatttggctttgttttatcttttgt 38010675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 39591540 - 39591576
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  39591540 ttatatgaaaacaatttgactttattttatcttttgt 39591576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 2205644 - 2205677
Alignment:
Q  28 tatgaaaacaatatgactttgttttatcttttgt 61  Q
    |||||||||||| |||||||||||||||||||||    
T  2205644 tatgaaaacaatttgactttgttttatcttttgt 2205677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 7714022 - 7713986
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  7714022 ttatatgaaaacaatttgactttattttatcttttgt 7713986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 42181165 - 42181201
Alignment:
Q  25 ttatatgaaaacaatatgactttgttttatcttttgt 61  Q
    |||||||||||| || |||||||||||||||||||||    
T  42181165 ttatatgaaaaccatttgactttgttttatcttttgt 42181201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University