View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_17 (Length: 281)
Name: NF11650_low_17
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 30122868 - 30123131
Alignment:
| Q |
1 |
aagactctatacacggttatttcagatggatatgtttcgaaataattcatgctgttgatctgagataagatgactactttgacaaaagtttctatttggt |
100 |
Q |
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| T |
30122868 |
aagactctatacacggttatttcagatggatatgtttcaaaataattcatgctgttgatctgagataagatgaatactttgacaaaagcttctatttggt |
30122967 |
T |
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| Q |
101 |
tcctgtcaagctgtttcgactttttaactgcaattatggttccttccagtaacattattactttatataccgcgccaactctggttgtagccatctgttg |
200 |
Q |
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| T |
30122968 |
tcctgtcaagctgtttcgactttttaactgcaattatggttccttccagtgacattattactttatataccgcgccaactctggttgtagctatctgttg |
30123067 |
T |
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| Q |
201 |
ctcttcgcagttcctctgctacaaaaagttttgccttttctccttttccataagacgagaattt |
264 |
Q |
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| T |
30123068 |
ctctttgcagttcctctgctataaaaagttttgccttttctccttttccataagacgagaattt |
30123131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 30115982 - 30115890
Alignment:
| Q |
54 |
gttgatctgagataagatgactactt---tgacaaaagtttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttcc |
143 |
Q |
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| T |
30115982 |
gttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgactttttaactgcgactatggttcc |
30115890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 30105891 - 30105786
Alignment:
| Q |
54 |
gttgatctgagataagatgactactt---tgacaaaagtttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttccttccagt |
150 |
Q |
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| T |
30105891 |
gttgatctgtgacaagatgaccacttcattgacaaaagtctctatctggttcctttctagttcttttgactttttaactgcaactatggttccatctggt |
30105792 |
T |
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| Q |
151 |
aacatt |
156 |
Q |
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|||||| |
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| T |
30105791 |
aacatt |
30105786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 30115831 - 30115761
Alignment:
| Q |
182 |
tggttgtagccatctgttgctcttcgcagttcctctgctacaaaaagttttgccttttctccttttccata |
252 |
Q |
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| T |
30115831 |
tggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatttctccatttccata |
30115761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 30105744 - 30105667
Alignment:
| Q |
178 |
actctggttgtagccatctgttgctcttcgcagttcctctgctacaaaaagttttgccttttctccttttccataaga |
255 |
Q |
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|||| |||||||| ||||||||||||| |||| || ||||| |||||| |||||| ||||||| ||||||||||| |
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| T |
30105744 |
actccggttgtagttatctgttgctctttgcagctcttctgccgtaaaaagctttgccatttctccatttccataaga |
30105667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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