View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_20 (Length: 255)
Name: NF11650_low_20
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4191429 - 4191193
Alignment:
| Q |
1 |
aaaatttactgtgcatacgctgaatgcagcctcaatatcctgaagctccaaaagacaggttgtatttcctgtttttggatcaagaattctgatgcaggat |
100 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191429 |
aaaatttactgtgcatccgctgaatgcagcctcattatcctgaagctccaaaagacaggttgtatttcctgtttttggatcaagaattctgatgcaggat |
4191330 |
T |
|
| Q |
101 |
gcccacttatctgattcagcttttggataaccataatgctcatcagagagggggtcatctttatcctcatcctccccgccattctccatttggtctcccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191329 |
gcccacttatctgattcagcttttggataaccataatgctcatcagagagggggtcatctttatcctcatcctccccgccattctccatttggtctcccc |
4191230 |
T |
|
| Q |
201 |
agcttgagcagcctcaaaacactctttctttgcagcttc |
239 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
4191229 |
agcttgagcagcctcaaaaca--ctttctttgcagcttc |
4191193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 52210988 - 52210793
Alignment:
| Q |
1 |
aaaatttactgtgcatacgctgaatgcagcctcaatatcctgaagctccaaaagacaggttgtatttcctgtttttggatcaagaattctgatgcaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52210988 |
aaaatttactgtgcatacgctgaatgcagcctcattatcctgaagctccaaaagacaggttgtatttcctgtttttggatcaagaattctgatgcaggat |
52210889 |
T |
|
| Q |
101 |
gcccacttatctgattcagcttttggataaccataatgctcatcagagagggggtcatctttatcctcatcctccccgccattctccatttggtct |
196 |
Q |
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| T |
52210888 |
gcccacttatctgattcagcttttggataaccataatgctcatcagagagggggtcatctttatcctcatcctccccgccattctccatttggtct |
52210793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 52210774 - 52210731
Alignment:
| Q |
196 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttc |
239 |
Q |
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| T |
52210774 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttc |
52210731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 47716320 - 47716511
Alignment:
| Q |
1 |
aaaatttactgtgcatacgctgaatgcagcctcaatatcctgaagctccaaaagacaggttgtatttcctgtttttggatcaagaattctgatgcaggat |
100 |
Q |
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||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |
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| T |
47716320 |
aaaatttacagtgcatatgctgaatgcagcctcattctcctgaagctccaaaagacaggtcgtatttcctgtccttggatcaagaactctgatgcaggat |
47716419 |
T |
|
| Q |
101 |
gcccacttatctgattcagcttttggataaccataatgctcatcagagagggggtcatctttatcctcatcctccccgccattctccatttg |
192 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||| || || ||||||||||||||||| |||||||||||||| |
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| T |
47716420 |
acccacttatctgattcagattttggataaccataatgctcgtcagagagggaatcgtcgttatcctcatcctccccaccattctccatttg |
47716511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 47857763 - 47857572
Alignment:
| Q |
1 |
aaaatttactgtgcatacgctgaatgcagcctcaatatcctgaagctccaaaagacaggttgtatttcctgtttttggatcaagaattctgatgcaggat |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| | ||||||||||||| |||||| || ||||||||||| |||||||||||| ||||||||||||| |
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| T |
47857763 |
aaaatttacggtgcatatgctgaatgcagcctcattctcctgaagctccagaagacatgtcgtatttcctgtccttggatcaagaactctgatgcaggat |
47857664 |
T |
|
| Q |
101 |
gcccacttatctgattcagcttttggataaccataatgctcatcagagagggggtcatctttatcctcatcctccccgccattctccatttg |
192 |
Q |
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|||||||||||||||||| ||||||||| || |||||||| |||||||||| || ||| ||||||||||||||| ||||||||||||| |
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| T |
47857663 |
acccacttatctgattcagattttggatagccgtaatgctcgtcagagagggaatcgccttgatcctcatcctccccatcattctccatttg |
47857572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 47716534 - 47716577
Alignment:
| Q |
196 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttc |
239 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
47716534 |
tccccagcatgagcagcctcaaaacactctttccttgcagcttc |
47716577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 47857540 - 47857506
Alignment:
| Q |
205 |
tgagcagcctcaaaacactctttctttgcagcttc |
239 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
47857540 |
tgagcagcctcaaaacactctttccttgcagcttc |
47857506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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