View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_21 (Length: 252)
Name: NF11650_low_21
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33382937 - 33382702
Alignment:
| Q |
1 |
caataatttctttggtagacatgatggaaaagaaacaccttgagattgttgtaacttgataaaataaaaattagaaacattttagctatcgaagagatta |
100 |
Q |
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| T |
33382937 |
caataatttctttggtagacatgatggaaaagaaatgccttgagattgttgtaacttgataaaataaaaattagaaacattttagctatcgaagagatta |
33382838 |
T |
|
| Q |
101 |
ctaggtgagtacgtacaaggttactccctttgagaagtttcgcaacacctggcctgcccaaaaattatgcaagcagatcttcaatcacaacatctcaagg |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
33382837 |
ctaggtgagtacgtaccaggttactccctttgagaagtttcgcaaca-----cctgcccaaaaattatgcaagcagatctttaatca-aacatctaaagg |
33382744 |
T |
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| Q |
201 |
atgaaacaatctagctatgtattagagtctcacttctctgtg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33382743 |
atgaaacaatctagctatgtattagagtctcacttctctgtg |
33382702 |
T |
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