View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_24 (Length: 247)

Name: NF11650_low_24
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_24
NF11650_low_24
[»] chr4 (19 HSPs)
chr4 (65-156)||(44633451-44633542)
chr4 (11-57)||(38408993-38409039)
chr4 (4-53)||(37089861-37089910)
chr4 (8-60)||(22783268-22783320)
chr4 (12-59)||(16934669-16934716)
chr4 (4-55)||(51015042-51015093)
chr4 (11-57)||(7941133-7941179)
chr4 (12-57)||(9176990-9177035)
chr4 (12-57)||(16932315-16932360)
chr4 (8-57)||(22780903-22780952)
chr4 (11-57)||(3825066-3825112)
chr4 (11-57)||(5637960-5638006)
chr4 (11-57)||(8528918-8528964)
chr4 (11-57)||(11434769-11434815)
chr4 (11-53)||(24888594-24888636)
chr4 (11-57)||(18846923-18846971)
chr4 (11-59)||(47868193-47868241)
chr4 (11-58)||(6764653-6764700)
chr4 (12-57)||(9174640-9174684)
[»] chr1 (13 HSPs)
chr1 (4-58)||(20291279-20291333)
chr1 (11-57)||(6822775-6822821)
chr1 (11-57)||(13761577-13761623)
chr1 (11-57)||(51752104-51752150)
chr1 (4-57)||(20302198-20302251)
chr1 (12-57)||(47177078-47177123)
chr1 (12-57)||(47179428-47179473)
chr1 (11-57)||(10400323-10400369)
chr1 (11-57)||(51749778-51749824)
chr1 (12-53)||(16225891-16225932)
chr1 (12-57)||(23783238-23783283)
chr1 (11-57)||(2617280-2617326)
chr1 (11-59)||(9521365-9521413)
[»] chr3 (22 HSPs)
chr3 (12-57)||(35777163-35777208)
chr3 (8-58)||(50493675-50493725)
chr3 (11-56)||(5191374-5191419)
chr3 (11-57)||(25388618-25388664)
chr3 (11-57)||(53896708-53896754)
chr3 (12-57)||(38210067-38210112)
chr3 (11-59)||(3859315-3859363)
chr3 (4-58)||(38889756-38889811)
chr3 (11-57)||(5885983-5886029)
chr3 (11-57)||(6066245-6066291)
chr3 (11-57)||(7606917-7606963)
chr3 (11-57)||(18097376-18097422)
chr3 (11-57)||(18099661-18099707)
chr3 (11-57)||(22114796-22114842)
chr3 (4-57)||(6063953-6064006)
chr3 (11-58)||(27101751-27101798)
chr3 (11-57)||(4308772-4308818)
chr3 (11-57)||(43225827-43225873)
chr3 (11-57)||(51727497-51727543)
chr3 (18-59)||(9605111-9605152)
chr3 (4-53)||(10192476-10192525)
chr3 (12-57)||(43228032-43228077)
[»] chr7 (13 HSPs)
chr7 (11-57)||(3878322-3878368)
chr7 (11-57)||(40837215-40837261)
chr7 (12-57)||(1047458-1047503)
chr7 (11-57)||(26804345-26804391)
chr7 (12-57)||(2935070-2935115)
chr7 (12-57)||(9027642-9027687)
chr7 (12-57)||(22107867-22107912)
chr7 (12-57)||(22136878-22136923)
chr7 (12-57)||(40549627-40549672)
chr7 (12-57)||(40551905-40551950)
chr7 (11-57)||(7464983-7465029)
chr7 (11-57)||(48457441-48457487)
chr7 (11-55)||(40946076-40946120)
[»] chr6 (13 HSPs)
chr6 (11-57)||(14507670-14507716)
chr6 (12-57)||(26068837-26068882)
chr6 (12-57)||(33308685-33308730)
chr6 (12-57)||(33310954-33310999)
chr6 (12-57)||(26066566-26066611)
chr6 (12-57)||(29755234-29755279)
chr6 (11-58)||(4816739-4816787)
chr6 (11-57)||(1230721-1230767)
chr6 (11-53)||(11983520-11983562)
chr6 (11-57)||(17695336-17695382)
chr6 (11-57)||(26064756-26064802)
chr6 (11-57)||(26084725-26084771)
chr6 (11-57)||(28241814-28241860)
[»] chr5 (25 HSPs)
chr5 (4-57)||(2174680-2174733)
chr5 (11-58)||(25921946-25921993)
chr5 (11-57)||(21684923-21684969)
chr5 (11-57)||(31179887-31179933)
chr5 (11-57)||(34479926-34479972)
chr5 (8-57)||(31544798-31544847)
chr5 (11-53)||(4236374-4236416)
chr5 (11-57)||(22672504-22672550)
chr5 (12-58)||(23664833-23664879)
chr5 (12-58)||(23793708-23793754)
chr5 (11-57)||(34477586-34477632)
chr5 (11-57)||(36402799-36402845)
chr5 (11-57)||(39797849-39797895)
chr5 (12-57)||(10749505-10749550)
chr5 (12-57)||(15355020-15355065)
chr5 (12-57)||(15357296-15357341)
chr5 (12-57)||(23667109-23667154)
chr5 (8-57)||(31542442-31542491)
chr5 (12-57)||(38960559-38960604)
chr5 (11-59)||(18186541-18186589)
chr5 (11-57)||(1240078-1240124)
chr5 (11-57)||(6747044-6747090)
chr5 (11-57)||(10529592-10529638)
chr5 (9-55)||(39854226-39854272)
chr5 (12-57)||(10756960-10757005)
[»] scaffold0127 (1 HSPs)
scaffold0127 (11-57)||(13008-13054)
[»] scaffold0068 (1 HSPs)
scaffold0068 (11-57)||(28941-28987)
[»] scaffold0025 (2 HSPs)
scaffold0025 (11-53)||(69787-69829)
scaffold0025 (11-53)||(73498-73540)
[»] chr2 (9 HSPs)
chr2 (11-53)||(27104519-27104561)
chr2 (4-57)||(19502497-19502550)
chr2 (12-57)||(45332630-45332675)
chr2 (12-57)||(36559313-36559358)
chr2 (12-57)||(36561632-36561677)
chr2 (14-57)||(24162709-24162752)
chr2 (4-58)||(19504831-19504885)
chr2 (11-57)||(43624039-43624085)
chr2 (11-57)||(45280457-45280503)
[»] chr8 (6 HSPs)
chr8 (12-57)||(18810483-18810528)
chr8 (12-57)||(43079347-43079392)
chr8 (12-57)||(43081722-43081767)
chr8 (12-57)||(18812668-18812713)
chr8 (11-58)||(9021592-9021639)
chr8 (15-53)||(14807552-14807590)
[»] scaffold0472 (1 HSPs)
scaffold0472 (12-57)||(5927-5972)
[»] scaffold0140 (2 HSPs)
scaffold0140 (12-57)||(21915-21960)
scaffold0140 (12-57)||(24190-24235)
[»] scaffold0552 (1 HSPs)
scaffold0552 (11-58)||(1303-1350)
[»] scaffold0038 (1 HSPs)
scaffold0038 (11-57)||(41976-42022)
[»] scaffold0256 (1 HSPs)
scaffold0256 (11-59)||(15974-16022)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 44633451 - 44633542
Alignment:
Q  65 atttaaaacattgtcgcattttctcttaaggaaaatggtgacacaaaaatacaaatttggtaatagttttgtatctttgtgggattgatttg 156  Q
    |||||||||  |||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  44633451 atttaaaaccatgtcacatattctattatggaaaatggtgacacaaaaatactaatttggtaattgttttgtatctttgtgggatcgatttg 44633542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 38409039 - 38408993
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38409039 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 37089861 - 37089910
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  37089861 ccttgccatcgtgccacgattctgcagaaatctgattttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22783268 - 22783320
Alignment:
Q  8 gctatcgtgccacgattctgcagaaatctaattttaagttaactctcacattc 60  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  22783268 gctatcgtaccacgattctgcagaaacctgattttaagttaactctcacattc 22783320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 16934669 - 16934716
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||    
T  16934669 tcgtgccacgattctgcagaaacctgattttaagttaactctcacatt 16934716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 51015093 - 51015042
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctca 55  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  51015093 ccttgccatcatgccacgattctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 7941179 - 7941133
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  7941179 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 9176990 - 9177035
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  9176990 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 16932315 - 16932360
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  16932315 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 22780903 - 22780952
Alignment:
Q  8 gctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||||    
T  22780903 gctatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 3825066 - 3825112
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||    
T  3825066 atcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 5637960 - 5638006
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||    
T  5637960 atcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 8528964 - 8528918
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  8528964 atcgtgacacgattctccagaaatctgattttaagttaactctcaca 8528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 11434815 - 11434769
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  11434815 atcgtaccacgattctgcagaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 24888636 - 24888594
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  24888636 atcgtgccacaattctgcagaaatctgattttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 18846971 - 18846923
Alignment:
Q  11 atcgtgccacgattctgcagaaa--tctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  18846971 atcgtgccacgattctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 47868241 - 47868193
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||||    
T  47868241 atcgtggcacgattctccagaattctgattttaagttaactctcacatt 47868193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 6764700 - 6764653
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||||||    
T  6764700 atcgtggcacgattctccagaattctgattttaagttaactctcacat 6764653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 9174640 - 9174684
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||| || || ||||||||||||||||||||    
T  9174640 tcgtgccacgattctgcag-aacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 20291333 - 20291279
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  20291333 ccttgccatcgtgccacgattctgcagaaatctgattttaagttaactctcacat 20291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 6822821 - 6822775
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  6822821 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 13761623 - 13761577
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  13761623 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 51752150 - 51752104
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  51752150 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 20302251 - 20302198
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  20302251 ccttgccatcatgccgcgattctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 47177123 - 47177078
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  47177123 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 47179473 - 47179428
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  47179473 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 10400323 - 10400369
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||    
T  10400323 atcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 51749824 - 51749778
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||    
T  51749824 atcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 16225932 - 16225891
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  16225932 tcgtgccacgattctgcagaaacctgattttaagttaactct 16225891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 23783283 - 23783238
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  23783283 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 2617326 - 2617280
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  2617326 atcgtggcacgattctccagaattctgattttaagttaactctcaca 2617280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 9521413 - 9521365
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    |||||| ||||||||| ||||  ||| ||||||||||||||||||||||    
T  9521413 atcgtggcacgattctccagatttctgattttaagttaactctcacatt 9521365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 35777208 - 35777163
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35777208 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 50493725 - 50493675
Alignment:
Q  8 gctatcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||    
T  50493725 gctatcgtgccacgattctgcagaaacctgattttaagttaactctcacat 50493675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 5191419 - 5191374
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcac 56  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  5191419 atcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 25388664 - 25388618
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  25388664 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 25388618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 53896708 - 53896754
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  53896708 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 38210112 - 38210067
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  38210112 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3859363 - 3859315
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||    
T  3859363 atcgtgccacgattatgcagaaacctgattttaagttaactctcacatt 3859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 38889811 - 38889756
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatc-taattttaagttaactctcacat 58  Q
    |||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  38889811 ccttgccatcgtaccacgattctgcagaaaacctaattttaagttaactctcacat 38889756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 5886029 - 5885983
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||    
T  5886029 atcgtgccacgattctgtaaaaacctaattttaagttaactctcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 6066245 - 6066291
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||    
T  6066245 atcgtgccacaattctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 7606917 - 7606963
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||    
T  7606917 atcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 18097376 - 18097422
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||    
T  18097376 atcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 18099661 - 18099707
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||    
T  18099661 atcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 22114796 - 22114842
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||| |||||| || ||||||||||||||||||||    
T  22114796 atcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 6063953 - 6064006
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||||||||||||| ||| || |||||||||||| |||||||    
T  6063953 ccttgccatcgtgccacgattctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 27101751 - 27101798
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||||||    
T  27101751 atcgtggcacgattctccagaattctgattttaagttaactctcacat 27101798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 4308772 - 4308818
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  4308772 atcgtggcacgattctccagaattctgattttaagttaactctcaca 4308818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 43225873 - 43225827
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  43225873 atcgtggcacgattctccagaattctgattttaagttaactctcaca 43225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 51727497 - 51727543
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  51727497 atcgtggcacgattctccagaattctgattttaagttaactctcaca 51727543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 9605111 - 9605152
Alignment:
Q  18 cacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||    
T  9605111 cacgattctccagaattctgattttaagttaactctcacatt 9605152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 10192476 - 10192525
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||| ||||||||||||||| ||| |||||| ||||| ||||||||||    
T  10192476 ccttgcgatcgtgccacgattccgcataaatctgattttcagttaactct 10192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 43228077 - 43228032
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  43228077 tcgtggcacgattctccagaattctgattttaagttaactctcaca 43228032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 3878368 - 3878322
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  3878368 atcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 40837215 - 40837261
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  40837215 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 1047458 - 1047503
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  1047458 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 26804391 - 26804345
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||    
T  26804391 atcgtgccacgattctgtagaaacctgattttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 2935115 - 2935070
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  2935115 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 9027642 - 9027687
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  9027642 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 22107912 - 22107867
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  22107912 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 22136923 - 22136878
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  22136923 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 40549672 - 40549627
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  40549672 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40549627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 40551950 - 40551905
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  40551950 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40551905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 7464983 - 7465029
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  7464983 atcgtggcacgattctccagaattctgattttaagttaactctcaca 7465029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 48457487 - 48457441
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  48457487 atcgtggcacgattctccagaattctgattttaagttaactctcaca 48457441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 40946120 - 40946076
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctca 55  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||    
T  40946120 atcgtggcacgattcttcagaattctgattttaagttaactctca 40946076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14507670 - 14507716
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  14507670 atcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 26068837 - 26068882
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  26068837 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 33308730 - 33308685
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  33308730 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 33310999 - 33310954
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  33310999 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 26066566 - 26066611
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||    
T  26066566 tcgtgccacgattctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 29755234 - 29755279
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  29755234 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 4816739 - 4816787
Alignment:
Q  11 atcgtgccacgattctgcag-aaatctaattttaagttaactctcacat 58  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  4816739 atcgtgccacgattctgcagaaaacctgattttaagttaactctcacat 4816787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 1230721 - 1230767
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  1230721 atcgtggcacgattctccagaattctgattttaagttaactctcaca 1230767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 11983520 - 11983562
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  11983520 atcgtaccacgattctgcagaaacctgattttaagttaactct 11983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 17695336 - 17695382
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  17695336 atcgtggcacgattctccagaattctgattttaagttaactctcaca 17695382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 26064802 - 26064756
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  26064802 atcgtggcacgattctccagaattctgattttaagttaactctcaca 26064756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 26084771 - 26084725
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  26084771 atcgtggcacgattctccagaattctgattttaagttaactctcaca 26084725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 28241814 - 28241860
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  28241814 atcgtggcacgattcttcagaattctgattttaagttaactctcaca 28241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 2174733 - 2174680
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  2174733 ccttgccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 25921946 - 25921993
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||    
T  25921946 atcgtgccacgattctgcagaaacctgattttaagttaactctcacat 25921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 21684923 - 21684969
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  21684923 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 31179887 - 31179933
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  31179887 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 31179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 34479926 - 34479972
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  34479926 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31544847 - 31544798
Alignment:
Q  8 gctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  31544847 gctatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 4236416 - 4236374
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  4236416 atcgtgccacaattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 22672550 - 22672504
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  22672550 atcgtggcacgattctccagaattctaattttaagttaactctcaca 22672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 23664879 - 23664833
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    ||||||||||||| |||||||| || |||||||||||||||||||||    
T  23664879 tcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 23793708 - 23793754
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    ||||||||||||| |||||||| || |||||||||||||||||||||    
T  23793708 tcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 34477586 - 34477632
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||    
T  34477586 atcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 36402799 - 36402845
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||    
T  36402799 atcgtgcctagattctgcagaaacctaattttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 39797895 - 39797849
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||    
T  39797895 atcgtgccacgattatgcagaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 10749550 - 10749505
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  10749550 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 15355020 - 15355065
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  15355020 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 15357296 - 15357341
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  15357296 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 23667154 - 23667109
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  23667154 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 31542491 - 31542442
Alignment:
Q  8 gctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||||||    
T  31542491 gctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 38960559 - 38960604
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  38960559 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 18186541 - 18186589
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    ||||| |||||||||||||||||  | ||||||||||||||||||||||    
T  18186541 atcgtaccacgattctgcagaaacttgattttaagttaactctcacatt 18186589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 1240124 - 1240078
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  1240124 atcgtggcacgattctccagaattctgattttaagttaactctcaca 1240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 6747090 - 6747044
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  6747090 atcgtggcacgattctccagaattctgattttaagttaactctcaca 6747044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 10529592 - 10529638
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  10529592 atcgtggcacgattctccagaattctgattttaagttaactctcaca 10529638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 39854272 - 39854226
Alignment:
Q  9 ctatcgtgccacgattctgcagaaatctaattttaagttaactctca 55  Q
    ||||| || ||||||||| ||||| ||||||||||||||||||||||    
T  39854272 ctatcatgacacgattctccagaattctaattttaagttaactctca 39854226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 10757005 - 10756960
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| |||||| |||||||| || ||||||||||||||||||||    
T  10757005 tcgtgctacgattgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 13008 - 13054
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  13008 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 28987 - 28941
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  28987 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 69787 - 69829
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  69787 atcgtgccacgattctgcagaaatctgattttaagttaactct 69829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 73498 - 73540
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  73498 atcgtgccacgattctgcataaatctgattttaagttaactct 73540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 27104561 - 27104519
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactct 53  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  27104561 atcgtgccacgattctgcagaaatctgattttaagttaactct 27104519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 19502497 - 19502550
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||| |||||    
T  19502497 ccttgccatcgtgccacgattctgcagaaacctgattttaagttaactatcaca 19502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 45332630 - 45332675
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  45332630 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 36559313 - 36559358
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  36559313 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 36561632 - 36561677
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  36561632 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 24162709 - 24162752
Alignment:
Q  14 gtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||||||||  | ||||||||||||||||||||    
T  24162709 gtgccacgattctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 19504831 - 19504885
Alignment:
Q  4 ccttgctatcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||| ||||||||| |||||||| |||| || |||||||||||||| ||||||    
T  19504831 ccttgccatcgtgccatgattctgctgaaacctgattttaagttaactttcacat 19504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 43624039 - 43624085
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||| ||||||||||||| || |||||||||||||| |||||    
T  43624039 atcgtgccatgattctgcagaaacctgattttaagttaactttcaca 43624085  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 45280457 - 45280503
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  45280457 atcgtggcacgattctccagaattctgattttaagttaactctcaca 45280503  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 18810528 - 18810483
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  18810528 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 43079392 - 43079347
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  43079392 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43079347  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 43081767 - 43081722
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  43081767 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43081722  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 18812713 - 18812668
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||    
T  18812713 tcgtgccacgattcttcagaaacctgattttaagttaactctcaca 18812668  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 9021592 - 9021639
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||||||    
T  9021592 atcgtggcacgattctccagaattctgattttaagttaactctcacat 9021639  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 14807590 - 14807552
Alignment:
Q  15 tgccacgattctgcagaaatctaattttaagttaactct 53  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  14807590 tgccacgattctgcagaaacctgattttaagttaactct 14807552  T

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Target: scaffold0472 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 5972 - 5927
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  5972 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 5927  T

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Target: scaffold0140 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 21960 - 21915
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  21960 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 21915  T

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Target: scaffold0140; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 24235 - 24190
Alignment:
Q  12 tcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||    
T  24235 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 24190  T

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Target: scaffold0552 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 1303 - 1350
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacat 58  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||||||    
T  1303 atcgtggcacgattctccagaattctgattttaagttaactctcacat 1350  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 41976 - 42022
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcaca 57  Q
    |||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  41976 atcgtggcacgattcttcagaattctgattttaagttaactctcaca 42022  T

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Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 16022 - 15974
Alignment:
Q  11 atcgtgccacgattctgcagaaatctaattttaagttaactctcacatt 59  Q
    |||||| ||||||||| ||||  ||| ||||||||||||||||||||||    
T  16022 atcgtggcacgattctccagatttctgattttaagttaactctcacatt 15974  T

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