View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_25 (Length: 244)

Name: NF11650_low_25
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_25
NF11650_low_25
[»] chr6 (18 HSPs)
chr6 (4-227)||(32814941-32815164)
chr6 (13-227)||(35129631-35129845)
chr6 (57-227)||(14775631-14775800)
chr6 (8-184)||(14041689-14041863)
chr6 (132-222)||(5495923-5496013)
chr6 (51-217)||(32551407-32551573)
chr6 (57-226)||(29610808-29610964)
chr6 (33-167)||(12714164-12714298)
chr6 (22-105)||(6407860-6407944)
chr6 (31-117)||(16836143-16836231)
chr6 (25-117)||(2700093-2700187)
chr6 (22-105)||(11570749-11570833)
chr6 (31-105)||(17964559-17964634)
chr6 (22-84)||(33687624-33687687)
chr6 (150-191)||(17964472-17964513)
chr6 (25-105)||(21309045-21309126)
chr6 (22-105)||(8747793-8747877)
chr6 (191-227)||(29892119-29892155)
[»] chr1 (25 HSPs)
chr1 (17-227)||(36724715-36724925)
chr1 (4-227)||(12906148-12906370)
chr1 (13-227)||(23193101-23193315)
chr1 (19-226)||(33380800-33381007)
chr1 (13-227)||(27761718-27761931)
chr1 (19-215)||(2493710-2493904)
chr1 (4-225)||(24159679-24159900)
chr1 (30-227)||(25661701-25661898)
chr1 (13-223)||(32987243-32987454)
chr1 (4-227)||(31063950-31064172)
chr1 (57-227)||(28857941-28858111)
chr1 (98-227)||(19309440-19309568)
chr1 (22-86)||(23192836-23192901)
chr1 (140-197)||(25654599-25654656)
chr1 (18-191)||(26927635-26927810)
chr1 (25-117)||(19799000-19799094)
chr1 (22-121)||(16035619-16035720)
chr1 (22-86)||(39588386-39588451)
chr1 (22-117)||(47451212-47451309)
chr1 (30-105)||(33301180-33301256)
chr1 (22-105)||(47455386-47455470)
chr1 (22-91)||(16649627-16649696)
chr1 (148-190)||(33301094-33301136)
chr1 (31-84)||(8332612-8332665)
chr1 (30-105)||(5346682-5346758)
[»] chr3 (31 HSPs)
chr3 (4-227)||(48435706-48435929)
chr3 (4-225)||(16982988-16983209)
chr3 (131-223)||(48432183-48432275)
chr3 (62-227)||(12156359-12156524)
chr3 (4-125)||(48432402-48432523)
chr3 (98-225)||(28243402-28243527)
chr3 (58-207)||(21100111-21100260)
chr3 (22-105)||(8887939-8888023)
chr3 (18-120)||(12112625-12112729)
chr3 (142-206)||(4662289-4662357)
chr3 (22-117)||(12965860-12965957)
chr3 (22-105)||(23666123-23666207)
chr3 (22-105)||(24038371-24038455)
chr3 (22-105)||(39775728-39775812)
chr3 (154-216)||(29067921-29067983)
chr3 (22-117)||(3672595-3672692)
chr3 (22-117)||(3692627-3692724)
chr3 (17-106)||(4662191-4662280)
chr3 (22-86)||(8883179-8883244)
chr3 (22-117)||(18467234-18467331)
chr3 (22-105)||(7571218-7571302)
chr3 (22-105)||(8069689-8069772)
chr3 (22-105)||(14438695-14438779)
chr3 (24-86)||(3419006-3419069)
chr3 (21-123)||(41280297-41280398)
chr3 (25-105)||(758368-758449)
chr3 (25-105)||(3657240-3657321)
chr3 (22-85)||(3033653-3033717)
chr3 (30-105)||(20520071-20520147)
chr3 (30-105)||(49971424-49971500)
chr3 (22-105)||(55431324-55431408)
[»] chr8 (27 HSPs)
chr8 (13-227)||(19954275-19954489)
chr8 (19-227)||(2469983-2470191)
chr8 (16-227)||(19949824-19950035)
chr8 (1-227)||(27236215-27236443)
chr8 (24-227)||(7145829-7146032)
chr8 (32-222)||(34517263-34517451)
chr8 (98-223)||(30778955-30779080)
chr8 (16-135)||(4544221-4544340)
chr8 (98-192)||(28237880-28237972)
chr8 (25-117)||(40125872-40125966)
chr8 (30-117)||(33416566-33416655)
chr8 (160-221)||(38182120-38182181)
chr8 (22-105)||(31449866-31449950)
chr8 (18-91)||(1807479-1807553)
chr8 (18-86)||(36683586-36683655)
chr8 (179-227)||(4544171-4544219)
chr8 (22-105)||(15875668-15875752)
chr8 (22-105)||(44925923-44926007)
chr8 (31-105)||(17953873-17953948)
chr8 (24-117)||(19166647-19166742)
chr8 (22-91)||(34118477-34118547)
chr8 (22-117)||(1910956-1911053)
chr8 (33-105)||(18876367-18876440)
chr8 (22-105)||(17025946-17026030)
chr8 (22-105)||(17556438-17556522)
chr8 (22-105)||(24090638-24090722)
chr8 (22-70)||(40130722-40130770)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-227)||(171594-171816)
[»] chr4 (25 HSPs)
chr4 (4-227)||(20513100-20513323)
chr4 (4-224)||(33722803-33723021)
chr4 (39-227)||(55081581-55081769)
chr4 (1-227)||(16595818-16596038)
chr4 (4-219)||(15020352-15020567)
chr4 (30-200)||(39991783-39991953)
chr4 (21-200)||(2575161-2575340)
chr4 (15-204)||(40684733-40684921)
chr4 (22-191)||(5271332-5271503)
chr4 (113-212)||(9931425-9931524)
chr4 (22-117)||(31273532-31273629)
chr4 (22-105)||(13521992-13522076)
chr4 (33-122)||(55251741-55251832)
chr4 (22-121)||(8030459-8030560)
chr4 (184-221)||(19906444-19906481)
chr4 (22-117)||(37264551-37264648)
chr4 (22-105)||(31269045-31269129)
chr4 (30-105)||(31765905-31765981)
chr4 (22-65)||(48276685-48276728)
chr4 (184-221)||(13059603-13059640)
chr4 (184-221)||(31766004-31766041)
chr4 (18-86)||(33468992-33469061)
chr4 (22-63)||(47244259-47244300)
chr4 (22-105)||(12823895-12823979)
chr4 (22-70)||(33463392-33463440)
[»] chr2 (22 HSPs)
chr2 (4-226)||(14104584-14104806)
chr2 (17-226)||(44957316-44957525)
chr2 (1-223)||(13060250-13060473)
chr2 (76-224)||(41558902-41559050)
chr2 (22-117)||(9180711-9180808)
chr2 (25-117)||(30650943-30651037)
chr2 (30-117)||(9189790-9189879)
chr2 (22-105)||(1934993-1935077)
chr2 (22-105)||(10160724-10160808)
chr2 (25-86)||(12796939-12797001)
chr2 (22-117)||(25478284-25478381)
chr2 (22-117)||(25497312-25497409)
chr2 (22-105)||(19892466-19892550)
chr2 (24-91)||(29677394-29677462)
chr2 (22-105)||(35601933-35602017)
chr2 (22-189)||(18344442-18344611)
chr2 (22-86)||(28603309-28603374)
chr2 (22-117)||(31326750-31326847)
chr2 (184-221)||(31326932-31326969)
chr2 (13-65)||(29433452-29433504)
chr2 (22-105)||(30658274-30658358)
chr2 (22-105)||(35638997-35639081)
[»] chr7 (22 HSPs)
chr7 (4-227)||(29478033-29478256)
chr7 (4-200)||(6898262-6898457)
chr7 (53-222)||(23616265-23616434)
chr7 (75-227)||(25832241-25832393)
chr7 (21-222)||(1289214-1289417)
chr7 (13-223)||(20130215-20130430)
chr7 (22-86)||(8268304-8268369)
chr7 (30-105)||(44510677-44510753)
chr7 (22-105)||(4579519-4579603)
chr7 (22-105)||(9650967-9651051)
chr7 (22-105)||(23866079-23866163)
chr7 (141-183)||(4343328-4343370)
chr7 (22-117)||(4930244-4930341)
chr7 (175-223)||(4338929-4338976)
chr7 (22-105)||(23246933-23247017)
chr7 (22-105)||(26341210-26341294)
chr7 (141-183)||(4339717-4339759)
chr7 (35-91)||(6590997-6591054)
chr7 (22-86)||(8076061-8076126)
chr7 (184-221)||(10388231-10388268)
chr7 (25-105)||(44423137-44423218)
chr7 (22-105)||(27238253-27238337)
[»] chr5 (29 HSPs)
chr5 (15-227)||(18265383-18265595)
chr5 (4-227)||(1286144-1286366)
chr5 (22-121)||(12103036-12103137)
chr5 (22-191)||(29167886-29168057)
chr5 (22-192)||(556706-556878)
chr5 (22-192)||(561478-561650)
chr5 (22-191)||(6155332-6155503)
chr5 (22-105)||(32461549-32461633)
chr5 (22-86)||(7451769-7451834)
chr5 (22-117)||(35679862-35679959)
chr5 (22-105)||(12045139-12045223)
chr5 (22-105)||(26667283-26667367)
chr5 (22-105)||(26938880-26938964)
chr5 (18-86)||(3665939-3666008)
chr5 (33-105)||(10759820-10759893)
chr5 (22-117)||(12501886-12501983)
chr5 (22-191)||(36423648-36423819)
chr5 (22-117)||(36428720-36428817)
chr5 (22-117)||(36937498-36937595)
chr5 (22-117)||(36942252-36942349)
chr5 (30-117)||(41996684-41996773)
chr5 (22-117)||(42001445-42001542)
chr5 (18-70)||(12102867-12102919)
chr5 (22-105)||(39523060-39523144)
chr5 (22-86)||(37652849-37652914)
chr5 (30-105)||(6514601-6514677)
chr5 (22-70)||(11981314-11981362)
chr5 (22-105)||(39518421-39518505)
chr5 (30-105)||(41587160-41587236)
[»] scaffold0182 (1 HSPs)
scaffold0182 (22-192)||(9799-9971)
[»] scaffold0352 (1 HSPs)
scaffold0352 (22-105)||(7115-7199)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-191)||(4085-4256)
[»] scaffold0057 (1 HSPs)
scaffold0057 (30-105)||(35653-35729)
[»] scaffold0012 (1 HSPs)
scaffold0012 (22-105)||(166086-166170)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 32815164 - 32814941
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||||||||||||||||||||| |||||||||||||||| |  |||||| |||||||||| ||||||| |||||||||||||| |||||| |||||||    
T  32815164 taggcttattcgcggactaggtcgtcctctttaagacgtttcgcggcactgcccaaaattgtgcaagcagactatcaaccacgacacccccagtataaaa 32815065  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32815064 cagcccagctacaaatgtatcaaagttctattgcactataggatctgttctagaaatacaccttcaaatatggtgctaagaccactataatatggtattg 32814965  T
Q  204 ataccactctattatggtactaag 227  Q
    ||||||||||||||||||||||||    
T  32814964 ataccactctattatggtactaag 32814941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 35129631 - 35129845
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaac 112  Q
    |||| ||||||||||| |||||||||||||||  | |||||| |||||||||| ||||||| ||||||||||||||  |  ||  ||||||||| ||| |    
T  35129631 tcgcagactaggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaagcagactatcaaccacgacatcatcaggataaaacagtccagc 35129730  T
Q  113 tacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactc 212  Q
    ||||| ||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35129731 tacaactgtatcagagtccttttgcactataggatctgttctagaaatacaccttcaaatatggtgctaagaccattctaatatggtattgataccactc 35129830  T
Q  213 tattatggtactaag 227  Q
    |||||||||||||||    
T  35129831 tattatggtactaag 35129845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 14775631 - 14775800
Alignment:
Q  57 caaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctag 156  Q
    ||||||||| ||||||| ||||||||||||| ||||| |  |||||||||| || |||| | ||||||||||| |||||||||| |||||||||||||||    
T  14775631 caaaattgtgcaagcagactatcaaccacgatgcccc-aggataaaacagctcagctaccactgtatcaaagtcctattgcactataggatctgttctag 14775729  T
Q  157 aaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
    ||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  14775730 aaagacacctttaaatatggtgctaaaaccactccaatatggtattgataccactctattatggtactaag 14775800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 14041689 - 14041863
Alignment:
Q  8 cttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagc 107  Q
    |||| ||||||| |||||||| |||||||| |||||| ||  ||||| | |||||||| || |||  |||||||||||||||| || || ||||||||||    
T  14041689 cttagtcgcggattaggtcgctctctttaaaacgtttcgtgacactgcctaaaattgtgcatgcat-ctatcaaccacgacgctcc-aagataaaacagc 14041786  T
Q  108 ccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaaga 184  Q
     ||  ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  14041787 tcagttacaactgtatcaaagtcctattgcactataggatctgttctagaaatacaccttgaaatatggtgctaaga 14041863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 5495923 - 5496013
Alignment:
Q  132 tattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggta 222  Q
    ||||||||| ||| ||||||| |||||||| ||||| |||||||||| |||||| |||| |||||||||||  ||||||||||||||||||    
T  5495923 tattgcactatagaatctgttatagaaatatacctttaaatatggtgttaagacaactccaatatggtatttctaccactctattatggta 5496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 32551573 - 32551407
Alignment:
Q  51 actgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctg 150  Q
    ||||| ||||||||| ||||||| ||||||||||| |||||| ||  ||||||||| |   |||||| |||||| || | |||||| | |||| |||| |    
T  32551573 actgttcaaaattgtgcaagcagactatcaaccacaacgccctcatgataaaacagtctggctacaactgtatcgaactcctattgtattgtaagatccg 32551474  T
Q  151 ttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctatta 217  Q
    ||||| ||||| ||||| |||||||  | |||||||| |  ||||||||||||||| ||||||||||    
T  32551473 ttctaaaaatatacctttaaatatgacgttaagaccatttcaatatggtattgatatcactctatta 32551407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 226
Target Start/End: Complemental strand, 29610964 - 29610808
Alignment:
Q  57 caaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctag 156  Q
    ||||||||| ||||||| ||||||||||||| | || ||  |||||| |||||| |||| | ||| ||  ||| ||| |||||||||||||| ||| |||    
T  29610964 caaaattgtgcaagcagactatcaaccacgatgacctcaggataaaatagcccagctacgattgtttcggagtcctactgcactgtaggatccgttatag 29610865  T
Q  157 aaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtactaa 226  Q
    ||||||||||||||||             ||||||||||||  |||||||||||||||||||||||||||    
T  29610864 aaatacaccttcaaat-------------cactctaatatgacattgataccactctattatggtactaa 29610808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 12714298 - 12714164
Alignment:
Q  33 tttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttct 132  Q
    ||||||||||||||| || |||   ||||||||| |||||  |||||||| |||||| || ||  |||||| |  ||| |||||| |||||| ||||  |    
T  12714298 tttaagacgttttgtggcgctgcaaaaaattgtataagcatactatcaactacgacgtccacaggataaaatacgccagctacaattgtatcgaagtatt 12714199  T
Q  133 attgcactgtaggatctgttctagaaatacacctt 167  Q
    ||||||||||| |||| ||||||||||||||||||    
T  12714198 attgcactgtaagatccgttctagaaatacacctt 12714164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 6407944 - 6407860
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtac-aagcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||| ||||||||| || |||||| |||||||||||| |||||| |||||||||||| |||| |||  ||||||||    
T  6407944 aggtcgctctcttgaagacgtttcgtggcactgcccaaaattgtacaaagcagactatcaaccacgccgcctccaggataaaaca 6407860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 16836231 - 16836143
Alignment:
Q  31 tctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    |||||||||||||| || |||||| |||||||||||||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  16836231 tctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 16836143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 2700187 - 2700093
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    |||| ||||||||||||||| || ||||||| ||||||||| |||| ||| |||||||||||| |||  |||  ||||||| |||||||||||||    
T  2700187 tcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaaccacgccgcttccaggataaaacaagcccaactacaa 2700093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 11570833 - 11570749
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| | |||||||||| |||| |||  ||||||||    
T  11570833 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagacaatcaaccacgccgcctccaggataaaaca 11570749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 17964634 - 17964559
Alignment:
Q  31 tctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||||||||||||| || ||||| ||||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  17964634 tctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 17964559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 33687687 - 33687624
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaacca 84  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| ||||||||||    
T  33687687 aggtcgctctctttaagacgtttcgtggcactggccaaaattgtgcaagacagactatcaacca 33687624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 17964513 - 17964472
Alignment:
Q  150 gttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  17964513 gttcgagaattacaccttcaaatatggtactaagaccactct 17964472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 21309045 - 21309126
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  21309045 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaatgcagactatcaaccacgccgcctccaggataaaaca 21309126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 8747793 - 8747877
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||  ||  ||||| |||||||||| |||| |||||||||||| ||| |||| |||  ||||||||    
T  8747793 aggtcgctctctttaagacgttccgtgacactgcccaaaattgtgcaagacaggctatcaacaacgccgcctccaggataaaaca 8747877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 29892155 - 29892119
Alignment:
Q  191 taatatggtattgataccactctattatggtactaag 227  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  29892155 taatatggtattgttaccactctgttatggtactaag 29892119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36724715 - 36724925
Alignment:
Q  17 ggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactaca 116  Q
    |||||||||||| |||||||||||||||| | |||||  |||||||||| ||||||| | |||||||||||||||||||| ||||||||||||| ||| |    
T  36724715 ggactaggtcgctctctttaagacgttttatggcactacccaaaattgtgcaagcagacaatcaaccacgacgcccccaagataaaacagcccagctata 36724814  T
Q  117 aatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctatt 216  Q
    | ||||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36724815 attgtatcaaagtcctattgcattataggatatgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctatt 36724914  T
Q  217 atggtactaag 227  Q
    |||| ||||||    
T  36724915 atggcactaag 36724925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 12906148 - 12906370
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||||| ||||| |||||||||| ||||||||||||||| || |||||| |||||||||| ||||||| ||||||||||||||||||| |  ||||||    
T  12906148 taggcttagtcgcgaactaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagcagactatcaaccacgacgcccc-aggataaaa 12906246  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    ||||| |  ||||| ||||||| ||| |||||||||  |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  12906247 cagccaagttacaattgtatcagagtcctattgcacaataggatatgttctaaaagtacaccttcaaatatggtgctaagaccactctaatatggtattg 12906346  T
Q  204 ataccactctattatggtactaag 227  Q
    |||||||| |||||||||||||||    
T  12906347 ataccactttattatggtactaag 12906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 23193315 - 23193101
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaac 112  Q
    |||||||||||||||| |||| ||||||||||  | ||||   |||||||| | ||||||| |||||||||||||||||||||  |||||||| | || |    
T  23193315 tcgcggactaggtcgctctctataagacgtttcatggcacaacccaaaattatgcaagcagactatcaaccacgacgcccccatgataaaacaactcatc 23193216  T
Q  113 tacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactc 212  Q
    ||||||||| | | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  23193215 tacaaatgtcttagagtcctattgcactataggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccattt 23193116  T
Q  213 tattatggtactaag 227  Q
    |||||||||||||||    
T  23193115 tattatggtactaag 23193101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 33381007 - 33380800
Alignment:
Q  19 actaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaa 118  Q
    |||||||||| ||||||||||||||| ||  |||||  ||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||| ||||||     
T  33381007 actaggtcgctctctttaagacgtttcgtgacactgctcaaaattgtgcaagcagactatcaaccacgacgtccccaagataaaacagcccagctacaac 33380908  T
Q  119 tgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattat 218  Q
    |||| || |||  ||||||||| ||||||||||||||||||||||||||| |||||||| || | ||||||| |||||||||  ||||||||||||||||    
T  33380907 tgtaccagagtcatattgcactataggatctgttctagaaatacaccttccaatatggttcttaaaccactccaatatggtaccgataccactctattat 33380808  T
Q  219 ggtactaa 226  Q
    ||||||||    
T  33380807 ggtactaa 33380800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 27761931 - 27761718
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaac 112  Q
    |||| ||||||||| | |||||||| |||||| || ||||||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||| ||| |    
T  27761931 tcgcagactaggtcactctctttaaaacgtttcgtggcactgtccaaaattgtgcaagcagactatcaaccacgacgtccccaggataaaacagtccagc 27761832  T
Q  113 tacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactc 212  Q
    ||||| ||||||| ||   ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| || |||||||||||||||||| ||    
T  27761831 tacaattgtatcagagca-tattgcactataggatctgttctagaaatacacctttcaatatggtgctaagaccattccaatatggtattgataccattc 27761733  T
Q  213 tattatggtactaag 227  Q
    ||||||| |||||||    
T  27761732 tattatgatactaag 27761718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 2493904 - 2493710
Alignment:
Q  19 actaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaa 118  Q
    |||||||||| ||||||||||||||| || |||||| |||||||||| ||||||  |||||||||||| ||||||||  |||||||| | || ||||||     
T  2493904 actaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagcaaactatcaaccacggcgcccccaggataaaacaactcagctacaat 2493805  T
Q  119 tgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctat 215  Q
     |||||||  | |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2493804 cgtatcaa--tcctattgcactatagggtctgttctagaaatacacattcaaatatggtgctaagaccattctaatatggtattgataccactctat 2493710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 24159900 - 24159679
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||||||||||||||| ||||||||||||||| |||  |||| |||||||||| ||||||| |||||||| |||||| |||||  ||||||    
T  24159900 taggctgagtcgcggactaggtcgctctctttaagacgtttcgtaatactgcccaaaattgtgcaagcagactatcaacgacgacgtccccaggataaaa 24159801  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    |||| || |||||| ||||||| |||||||||||||| || ||||||||||||||||||||||||  ||||||| |||| ||||||||| ||||||| |     
T  24159800 cagctcagctacaactgtatcatagttctattgcactatatgatctgttctagaaatacaccttccgatatggttctaaaaccactctattatggtacta 24159701  T
Q  204 ataccactctattatggtacta 225  Q
    | ||||||||  ||||||||||    
T  24159700 agaccactcttatatggtacta 24159679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 25661898 - 25661701
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagt 129  Q
    |||||||||||||||||| |||||  |||||||||| |||| || |||||||||| |||||||  |  |||||||||| || |||||| ||||||| |||    
T  25661898 ctctttaagacgttttgtggcactacccaaaattgtgcaagtagactatcaaccatgacgcccttaggataaaacagctcagctacaattgtatcagagt 25661799  T
Q  130 tctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
     |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||  |||||||| |||||||||||||||    
T  25661798 cctattgcactataggatatgttctagaaatacaccttcaaatatggggctaagaccactccaatatggtatatataccactttattatggtactaag 25661701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 32987243 - 32987454
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaac 112  Q
    |||||||||||||| | |||||||||| ||||||| |||||| | |||||||| ||||||| ||||||| || |||||||| |  | ||||||| |||||    
T  32987243 tcgcggactaggtcactctctttaagatgttttgtggcactgcctaaaattgtgcaagcagactatcaatcatgacgcccctaggagaaaacagtccaac 32987342  T
Q  113 tacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaa-atatggtgctaagaccactctaatatggtattgataccact 211  Q
    ||||| ||||||| ||| |||||||||| || ||||| || |||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  32987343 tacaattgtatcagagtcctattgcactatatgatctcttttagaaatacatcttcaatatatggtgctaagatcactccaatatggtattgataccact 32987442  T
Q  212 ctattatggtac 223  Q
    ||||||||||||    
T  32987443 ctattatggtac 32987454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 31063950 - 31064172
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | ||| |||||||||||| |||||||||| |||| || ||||| ||||||||||| ||||||  ||||||||||||||| ||| |  ||||||    
T  31063950 taggctgagtcgtggactaggtcgctctctttaagaggtttcgtggcactttccaaaattgttcaagcaaactatcaaccacgacgtccc-aggataaaa 31064048  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    ||||||| | |||| | ||||| |||  ||||||||| ||||||||||||| ||||||||| |  ||||||||||||||||||| |||||||| | ||||    
T  31064049 cagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacacttcaaaatatggtgctaagaccattctaatattgcattg 31064148  T
Q  204 ataccactctattatggtactaag 227  Q
    ||| ||||||||||||||||||||    
T  31064149 atagcactctattatggtactaag 31064172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 28858111 - 28857941
Alignment:
Q  57 caaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctag 156  Q
    ||||||||| ||||||| ||||||||||||||| |||||  |||||| ||| || ||| || ||||||||||| |||||||||| ||||||||| |||||    
T  28858111 caaaattgtgcaagcagactatcaaccacgacgtccccaggataaaatagctcagctaaaactgtatcaaagtcctattgcactataggatctgctctag 28858012  T
Q  157 aaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
    ||||||| |||| |||||| || ||| |||||||||||||| |||||||| |||||| |||||||| ||||    
T  28858011 aaatacatcttccaatatgatgttaaaaccactctaatatgatattgatatcactctgttatggtattaag 28857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 19309568 - 19309440
Alignment:
Q  98 ataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgcta----agaccactctaa 193  Q
    |||||| ||||||||||||| ||||||||||| |||||||||| |||||| ||||||| | ||    |||||||||||||||||    |||||||||||     
T  19309568 ataaaagagcccaactacaattgtatcaaagtcctattgcactataggatatgttctatatat----cttcaaatatggtgctagctaagaccactcta- 19309474  T
Q  194 tatggtattgataccactctattatggtactaag 227  Q
    |||||   ||||||||||||||||||||||||||    
T  19309473 tatggctgtgataccactctattatggtactaag 19309440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 23192901 - 23192836
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||||| ||||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||    
T  23192901 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacg 23192836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 25654656 - 25654599
Alignment:
Q  140 tgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatg 197  Q
    |||| ||||||||||||||||||  ||| |||||||||| ||||||||||||||||||    
T  25654656 tgtatgatctgttctagaaatacgactttaaatatggtgttaagaccactctaatatg 25654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 26927810 - 26927635
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactac 115  Q
    ||||| ||||| ||||||||||||||| || ||| || |||||||||| ||| |||| |||||||||||| |||| | || ||||||| |||||| ||||    
T  26927810 gactaagtcgctctctttaagacgtttcgtggcattgcccaaaattgtgcaaggcagactatcaaccacgccgcctctaaaataaaacaagcccagctac 26927711  T
Q  116 aaatgtatcaaagttctattgcactgtaggatct-gttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    || |||| ||     ||| |||||||||| |  | |||| |||| ||||||| |||||||||| |||||||||||||    
T  26927710 aactgta-cacttaactactgcactgtagaaaatcgttcgagaattacacctccaaatatggtactaagaccactct 26927635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 19799094 - 19799000
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    |||| ||||||||||||||| || ||||| ||||||||||| |||| ||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  19799094 tcgctctctttaagacgtttcgtggcactatccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 19799000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 16035619 - 16035720
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    |||||||||||||||| |||||| || |||||||||||| |||| |||| |||  ||||||||||| |||| |||  ||||||| ||| || ||||||||    
T  16035619 aggtcgccctctttaacacgtttcgtggcactgtccaaagttgtgcaagacagattatcaaccacgccgcctccaggataaaacaagctcatctacaaat 16035718  T
Q  120 gt 121  Q
    ||    
T  16035719 gt 16035720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 39588451 - 39588386
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacg 86  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| |||| ||| ||||| ||||||    
T  39588451 aggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaagacagactatctaccacg 39588386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 47451309 - 47451212
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||  | |||||| | |||||||| |||| ||| |||||||||||| |||| |||| ||||||| ||| |||||||||    
T  47451309 aggtcgctctctttaagacgtttcatggcactgccaaaaattgtgcaagacagactatcaaccacgccgcctccaagataaaacaagctcaactacaa 47451212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 33301256 - 33301180
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  33301256 ctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 33301180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 47455470 - 47455386
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || ||| ||||||||||||| |||| |||  ||||||||||| |||| |||  ||||||||    
T  47455470 aggtcgctctctttaagacgtttcgtggcaatgtccaaaattgtgcaagacagattatcaaccacgccgcctccaggataaaaca 47455386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 16649696 - 16649627
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcc 91  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| ||||  || |||||||||||| ||||    
T  16649696 aggtcgctctctttaagacgttt-gtggcactgtccaaaattgtgcaagatagactatcaaccacgccgcc 16649627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 33301136 - 33301094
Alignment:
Q  148 ctgttctagaaatacaccttcaaatatggtgctaagaccactc 190  Q
    |||||| |||| |||||||||||||||||| ||||||||||||    
T  33301136 ctgttcgagaattacaccttcaaatatggtactaagaccactc 33301094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 8332665 - 8332612
Alignment:
Q  31 tctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaacca 84  Q
    ||||||||| |||| || | ||||||||||||| |||||||||| |||||||||    
T  8332665 tctttaagatgtttcgtggtactgtccaaaattatacaagcaggttatcaacca 8332612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 5346682 - 5346758
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||||||| ||||||||| |||||||||||| ||||||||  ||| ||||||| |||| |||| |||| || |||||    
T  5346682 ctctttaaaacgttttgtggcactgtccaaatttgtacaatacagactatcaatcacgccgcctccaagatgaaaca 5346758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 48435929 - 48435706
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||||||||||||||| ||||||||||||||| ||  |||||| |||||| || ||||||| ||||||||||||||| |||||  ||||||    
T  48435929 taggctgagtcgcggactaggtcgctctctttaagacgtttcgtgacactgttcaaaatagtgcaagcagactatcaaccacgacgtccccaggataaaa 48435830  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    |||| || |||||| ||||||| ||| |||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48435829 cagctcagctacaattgtatcagagtcctattgcattaaaggatctgttttagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 48435730  T
Q  204 ataccactctattatggtactaag 227  Q
    ||||||||||||||||||||||||    
T  48435729 ataccactctattatggtactaag 48435706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 16982988 - 16983209
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| |||||||||||||||||| || ||||||||||||  |  ||||||||||||||||  ||| ||  |||||||||||| | |||||  ||||||    
T  16982988 taggctgattcgcggactaggtcgctctttttaagacgtttcatgacactgtccaaaattgtgaaagaagaatatcaaccacgatgtccccaggataaaa 16983087  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    || |||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16983088 caacccagctacaactgtatcaaagtcctattgcactataggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatgatattg 16983187  T
Q  204 ataccactctattatggtacta 225  Q
    ||||||||||||||||||||||    
T  16983188 ataccactctattatggtacta 16983209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 48432275 - 48432183
Alignment:
Q  131 ctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtac 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48432275 ctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgttaagaccactctaatatggtattgataccactctattatggtac 48432183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 12156524 - 12156359
Alignment:
Q  62 ttgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaata 161  Q
    |||||||||||| ||||||||||||||| |||||  ||||||||| |||  | |||  |||||| |||  ||||| ||| || |||||| ||||||||||    
T  12156524 ttgtacaagcagactatcaaccacgacgtccccatgataaaacagtccagttgcaaccgtatcagagtcatattgtactatatgatctgatctagaaata 12156425  T
Q  162 caccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  12156424 caccttctaatatggtgctaagaccactctaatatggtattgacatcactctattatggtactaag 12156359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 48432402 - 48432523
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||||||||||||||| |||||||||||||||||| |||||| ||||||||||  || ||| ||||||||||||||| |||||| ||||||    
T  48432402 taggctgagtcgcggactaggtcgctctctttaagacgttttgtggcactgcccaaaattgtgaaaacagactatcaaccacgacgtccccaagataaaa 48432501  T
Q  104 cagcccaactacaaatgtatca 125  Q
    ||||| | |||||| |||||||    
T  48432502 cagcctagctacaactgtatca 48432523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 28243527 - 28243402
Alignment:
Q  98 ataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatg 197  Q
    |||||||| | ||||||||| |||  || ||| ||||| |||| || ||||| ||||||||| |||| || |||||||||||||||| ||||||||||||    
T  28243527 ataaaacaacacaactacaactgt--cagagtcctattacactataagatctattctagaaacacacttttaaatatggtgctaagatcactctaatatg 28243430  T
Q  198 gtattgataccactctattatggtacta 225  Q
    |||| |||| ||||| |||| |||||||    
T  28243429 gtatcgatatcactccattagggtacta 28243402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 21100111 - 21100260
Alignment:
Q  58 aaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctaga 157  Q
    |||||||| ||| ||| |||| ||||| ||||||||||| ||||||||| | | |||||| ||||||  |||  || ||   |||| |||||||||||||    
T  21100111 aaaattgtgcaaacagactattaaccatgacgcccccaagataaaacagtctagctacaattgtatcggagtcttactgtgttgtaagatctgttctaga 21100210  T
Q  158 aatacaccttcaaatatggtgctaagaccactctaatatggtattgatac 207  Q
    |||||||||||| || |||||  |||  ||||| ||||||||||||||||    
T  21100211 aatacaccttcatatgtggtgtcaaggtcactccaatatggtattgatac 21100260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 8887939 - 8888023
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||| |||  ||||||||||| |||| |||  ||||||||    
T  8887939 aggtcgctctctttaagacgttttgttgcactgtccaaaattgtgcaagacagattatcaaccacgccgcctccaggataaaaca 8888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 12112729 - 12112625
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactac 115  Q
    ||||||||||| ||||||||||||||| || |||||||||||| |||| |||| ||| |||||||||||  |||| |||  ||||||| ||| |||||||    
T  12112729 gactaggtcgctctctttaagacgtttcgtggcactgtccaaagttgtgcaagacagactatcaaccacaccgcctccaggataaaacaagctcaactac 12112630  T
Q  116 aaatg 120  Q
    |||||    
T  12112629 aaatg 12112625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 4662289 - 4662357
Alignment:
Q  142 taggatctgttctagaaatacaccttcaaatatggt----gctaagaccactctaatatggtattgata 206  Q
    ||||||||||||||  ||||||||||||||||||||    |||||||||||||| ||||||||||||||    
T  4662289 taggatctgttctatgaatacaccttcaaatatggtgttagctaagaccactctcatatggtattgata 4662357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 12965957 - 12965860
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||| | |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||| || ||||||||||    
T  12965957 aggtcgctctctttaagacgttttatggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaacaagtccaactacaa 12965860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 23666207 - 23666123
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  23666207 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 23666123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 24038455 - 24038371
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  24038455 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 24038371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 39775812 - 39775728
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  39775812 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 39775728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 29067983 - 29067921
Alignment:
Q  154 tagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctatt 216  Q
    |||||||| ||||| ||||||| || ||||||||||| ||||||  |||||||||||||||||    
T  29067983 tagaaataaacctttaaatatgatggtaagaccactccaatatgaaattgataccactctatt 29067921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 3672595 - 3672692
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  3672595 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 3672692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 3692627 - 3692724
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  3692627 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 3692724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 4662191 - 4662280
Alignment:
Q  17 ggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacag 106  Q
    |||||||||||| |||| |||||||||| || | | || |||||||| | ||||||| |||||||||| |||| |||||  |||||||||    
T  4662191 ggactaggtcgctctctctaagacgtttagtggaaatgcccaaaattatgcaagcagactatcaaccatgacgtccccaggataaaacag 4662280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8883179 - 8883244
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacg 86  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| ||||||||||||    
T  8883179 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacg 8883244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 18467234 - 18467331
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||| ||||||| |||| |||  ||||||| || ||||||||||    
T  18467234 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccgcctccaggataaaacaagtccaactacaa 18467331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 7571302 - 7571218
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| ||||||| |||| |||| |||  ||||||||    
T  7571302 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaatcacgccgcctccaggataaaaca 7571218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 8069689 - 8069772
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || ||||||||| ||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  8069689 aggtcgctctctttaagacgtttcgtggcactgtcc-aaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 8069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 14438779 - 14438695
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||||||||||| || |||||  |||||||||| ||| |||| | |||||||||| |||| |||  ||||||||    
T  14438779 aggtcgccctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagacaatcaaccacgccgcctccaggataaaaca 14438695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 3419006 - 3419069
Alignment:
Q  24 gtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||| ||||||||||||||| || |||||| |||||||||| ||| |||| ||||||||||||    
T  3419006 gtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 3419069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 41280398 - 41280297
Alignment:
Q  21 taggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatg 120  Q
    |||||||| || ||||||| |||||| ||||||| |||||| |||  | ||||  |||||||||||||| ||| || |||||| ||| ||| ||||||||    
T  41280398 taggtcgctctttttaagaggttttgcagcactgcccaaaactgtgga-gcagattatcaaccacgacgtccctaaaataaaatagctcaaatacaaatg 41280300  T
Q  121 tat 123  Q
    |||    
T  41280299 tat 41280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 758449 - 758368
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||| ||||||||||||||| || |||||  |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  758449 tcgctctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 758368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 3657321 - 3657240
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||| ||||||||||||||| || ||||||| ||||||||| |||| ||| |||||||||| | | || |||| ||||||||    
T  3657321 tcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaaccatgccacctccaagataaaaca 3657240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 3033653 - 3033717
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccac 85  Q
    ||||||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||    
T  3033653 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccac 3033717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 20520071 - 20520147
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| || |||||| |||| ||||| ||| | || |||||||||||| |||| |||| ||||||||    
T  20520071 ctctttaagacgtttcgtggcactgcccaagattgtgcaagggagactatcaaccacgccgcctccaagataaaaca 20520147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 49971500 - 49971424
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| || ||||| ||||||||||| ||| |||| ||||||| |||| |||| |||  ||||||||    
T  49971500 ctctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaatcacgccgcctccaggataaaaca 49971424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 55431324 - 55431408
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| ||  ||||||| |||||| | ||| |||| |||||||||||| |||| |||  ||||||||    
T  55431324 aggtcgctctctttaagacgtttcgtgacactgtcaaaaattatgcaaggcagactatcaaccacgccgcctccaggataaaaca 55431408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 19954275 - 19954489
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaac 112  Q
    |||| |||||| |||| |||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||   ||||||||||||| |    
T  19954275 tcgcagactagatcgctctctttaagacgttttgtggcactgcccaaaattgtacaagcagactatcaaccacgacgtccccttgataaaacagcccagc 19954374  T
Q  113 tacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactc 212  Q
    | ||| ||||| | ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  19954375 tgcaactgtataagagtcctattgcactataggatctgttctagaaatacaccttccaatatggtgctaagatcactccaatatggtattgataccactc 19954474  T
Q  213 tattatggtactaag 227  Q
    |||||| ||||||||    
T  19954475 tattattgtactaag 19954489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 2469983 - 2470191
Alignment:
Q  19 actaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaa 118  Q
    |||||||||| |||||||||||||||||| ||||||  ||||||||| ||||||| |||||||| |||||| |||||  |||||||| | || ||||||     
T  2469983 actaggtcgctctctttaagacgttttgtggcactgctcaaaattgtgcaagcagactatcaactacgacgtccccaggataaaacaacacagctacaac 2470082  T
Q  119 tgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattat 218  Q
    ||||||| ||| |||||||||| |||||| ||||| ||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  2470083 tgtatcagagtcctattgcactataggatttgttcgagaaatataccttccaatatggttctaagaccactccaatatggtattgataccactttattat 2470182  T
Q  219 ggtactaag 227  Q
     ||||||||    
T  2470183 agtactaag 2470191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 19949824 - 19950035
Alignment:
Q  16 cggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactac 115  Q
    ||||||| ||||| |||||||||| |||| || |||||| |||||||||  ||||||| |||||||||| |||| || ||  |||||||||| || || |    
T  19949824 cggactacgtcgctctctttaagaagtttcgtggcactgcccaaaattgagcaagcagactatcaaccatgacgtcctcaggataaaacagctcagctgc 19949923  T
Q  116 aaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctat 215  Q
    || ||||| | | | |||||||||| |||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||||    
T  19949924 aattgtataagaatcctattgcactataggatctgttctagaaatacaccatccaatatggttctaagaccactccaatatggtattgataccactctat 19950023  T
Q  216 tatggtactaag 227  Q
    ||||||||||||    
T  19950024 tatggtactaag 19950035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27236443 - 27236215
Alignment:
Q  1 tattaggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatata 100  Q
    ||||||||| |||||||||||| |||||  ||||| ||| ||||||| ||||||  |||| |||| ||| ||  |||||||||||||||| ||||  |||    
T  27236443 tattaggctgattcgcggactatgtcgctttctttgagatgttttgtggcactgctcaaagttgtgcaaacaaactatcaaccacgacgctcccatgata 27236344  T
Q  101 aaacagcccaactacaaatgtatcaaagttctat--tgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatgg 198  Q
     |||| |||||||| || ||||||| ||| ||||  | |||| || |||||| | |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  27236343 gaacaacccaactaaaattgtatcagagtcctatattacactatatgatctgctatagaaatatacctttaaatatggtactaagaccactctaatatgg 27236244  T
Q  199 tattgataccactctattatggtactaag 227  Q
    |||||||| ||||||||||||| ||||||    
T  27236243 tattgatatcactctattatggcactaag 27236215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 7145829 - 7146032
Alignment:
Q  24 gtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtat 123  Q
    ||||| ||| |||| || ||||||  ||||||  |||||||| ||||||| |||||||| ||||| ||| ||  |||||||||| || |||||| |||||    
T  7145829 gtcgctctcgttaacacattttgtgacactgtttaaaattgtgcaagcagactatcaactacgacacccacagaataaaacagctcagctacaactgtat 7145928  T
Q  124 caaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtac 223  Q
    |  ||| ||| |||| |||||||| ||||||||||||||||||| | |||||||| ||| ||||||| |||||| |||| | |||||| |||||||||||    
T  7145929 cggagtcctactgcattgtaggatatgttctagaaatacacctttagatatggtgttaaaaccactccaatatgatatttacaccactgtattatggtac 7146028  T
Q  224 taag 227  Q
    ||||    
T  7146029 taag 7146032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 34517263 - 34517451
Alignment:
Q  32 ctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttc 131  Q
    ||||||||||||| || |||||||| |||||||| |||| || |||||||||||||||||||||| |||||||| | ||||||||| ||||||| ||| |    
T  34517263 ctttaagacgtttcgtggcactgtc-aaaattgtgcaaggagactatcaaccacgacgcccccaagataaaacaactcaactacaactgtatcagagtcc 34517361  T
Q  132 tattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggta 222  Q
    || || | |||| ||| ||||||| |||||||| ||||||||| ||||||| ||||||   ||||| ||||  |||||||||||| |||||    
T  34517362 tactgtattgtaagatatgttctaaaaatacactttcaaatattgtgctaaaaccacttggatatgatatt-ttaccactctattttggta 34517451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 30778955 - 30779080
Alignment:
Q  98 ataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatg 197  Q
    ||||||||||  | |||||| ||||||| |||  |||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||    
T  30778955 ataaaacagcttagctacaactgtatcagagtcatattacactataggatctgttctagaaatacactttcaaaaatggtgctaagaccacttcaatatg 30779054  T
Q  198 gtattgataccactctattatggtac 223  Q
    ||| ||||||||||||||||||||||    
T  30779055 gtactgataccactctattatggtac 30779080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 4544340 - 4544221
Alignment:
Q  16 cggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactac 115  Q
    ||||||||||||| |||||||||||||||  | ||||||  ||||||||| |||| || ||||||||||| ||| ||| |  ||||||||| ||| ||||    
T  4544340 cggactaggtcgctctctttaagacgtttcatggcactgctcaaaattgtgcaagtagactatcaaccactacgtccctaggataaaacagtccagctac 4544241  T
Q  116 aaatgtatcaaagttctatt 135  Q
    || ||||||| ||| |||||    
T  4544240 aactgtatcagagtcctatt 4544221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 28237880 - 28237972
Alignment:
Q  98 ataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactcta 192  Q
    |||||||| ||||||||||| ||||||| ||| ||||||||||  ||  ||||||||| ||||||||| |||||||||||| ||||| |||||||    
T  28237880 ataaaacaacccaactacaactgtatcagagtcctattgcactagag--tctgttctaaaaatacaccatcaaatatggtgttaagagcactcta 28237972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 40125966 - 40125872
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    |||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||| ||||||| |||||| ||||||    
T  40125966 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaagataaaacaagcccagctacaa 40125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 33416566 - 33416655
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||| ||||||| |||||| ||||||    
T  33416566 ctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaagataaaacaagcccagctacaa 33416655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 38182181 - 38182120
Alignment:
Q  160 tacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggt 221  Q
    |||||||||||||||||| |||| |||||| ||||||| ||||| ||||||||| |||||||    
T  38182181 tacaccttcaaatatggtactaaaaccactttaatatgatattgttaccactctgttatggt 38182120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 31449950 - 31449866
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  31449950 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 31449866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1807479 - 1807553
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcc 91  Q
    ||||||||||| ||||||||||||||| ||  ||||| |||||||||| ||| |||| |||||||||||| ||||    
T  1807479 gactaggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcc 1807553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 36683586 - 36683655
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||||||||| ||||||||||||||| || |||||| ||||||||||  || |||| ||||||||||||    
T  36683586 gactaggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaaggcagactatcaaccacg 36683655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 4544219 - 4544171
Alignment:
Q  179 ctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
    ||||||||| |  |||||||||||||||||| |||||||||||||||||    
T  4544219 ctaagaccatttcaatatggtattgataccattctattatggtactaag 4544171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 15875752 - 15875668
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||| ||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  15875752 aggtcgctctctttaggacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 15875668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 44926007 - 44925923
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| |||||||| |||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  44926007 aggtcgctctctttaaaacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 44925923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 17953948 - 17953873
Alignment:
Q  31 tctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||||||||||||| || |||||| |||||||||| |||| |||  ||||||||||| |||| |||| ||||||||    
T  17953948 tctttaagacgtttcgtggcactgcccaaaattgtgcaagacagaatatcaaccacgccgcctccaagataaaaca 17953873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 19166647 - 19166742
Alignment:
Q  24 gtcgccctctttaagacgttttgtagcactgtccaaaattgtaca-agcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||| ||||||||||||||| || |||||| |||||||||| ||  |||| |||||||||||| |||| |||  ||||||| ||| |||||||||    
T  19166647 gtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcacggcagactatcaaccacgccgcctccaggataaaacaagctcaactacaa 19166742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 34118477 - 34118547
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcc 91  Q
    ||||||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||| ||||    
T  34118477 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgtcgcc 34118547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 1911053 - 1910956
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtac-aagcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||   ||||||||| | |||||| ||||||||||||  ||| ||| |||||||| ||| |||||||||    
T  1911053 aggtcgctctctttaagacgtttcgtggcactagtcaaaattgtgcaaagcagactatcaaccacgctgcctccagtataaaacaagctcaactacaa 1910956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 18876440 - 18876367
Alignment:
Q  33 tttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  18876440 tttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 18876367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 17025946 - 17026030
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||| ||||| |||| ||| ||||||| |||| |||| |||  ||||||||    
T  17025946 aggtcgctctctttaagacgtttcgtggcactgcccaacattgtgcaagacagactatcaatcacgtcgcctccaggataaaaca 17026030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 17556438 - 17556522
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||| ||||| |||| ||| ||||||| |||| |||| |||  ||||||||    
T  17556438 aggtcgctctctttaagacgtttcgtggcactgcccaacattgtgcaagacagactatcaatcacgtcgcctccaggataaaaca 17556522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 24090638 - 24090722
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| ||||| |||| ||| ||||  |||||| |||| |||| |||| ||||||||    
T  24090638 aggtcgctctctttaagacgtttcgtggcactgcccaaagttgtgcaaggcagaatatcaatcacgtcgcctccaagataaaaca 24090722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 40130770 - 40130722
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag 70  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||||    
T  40130770 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaag 40130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 171816 - 171594
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||| ||||||||||| ||||||||||||||| || |||||| | |||||||| ||||||| ||||||||||||||| ||  |  ||||||    
T  171816 taggctgagtcgcagactaggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaagcagactatcaaccacgacgtcct-aggataaaa 171718  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    |||||||||||||| ||||| | | | |||||||||| ||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||    
T  171717 cagcccaactacaactgtataagaatcctattgcactataggatctgttctagaaatacaccttccaatatggttctaagatcactccaatatggtattg 171618  T
Q  204 ataccactctattatggtactaag 227  Q
    ||||||||||||||||||||||||    
T  171617 ataccactctattatggtactaag 171594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 20513100 - 20513323
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | ||| |||||||||||| |||||||||| |||| || ||||||  ||||||||| ||||||| |||||||||||||||  ||||  ||||||    
T  20513100 taggctgagtcgtggactaggtcgctctctttaagatgtttcgtggcactgctcaaaattgtgcaagcagactatcaaccacgacgttcccaggataaaa 20513199  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    || | || |||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||    
T  20513200 caactcagctacaactgtatcagagtcctattgcactataggatctgttctagaaatacaccttccaatatgatgttaagaccactccaatatggtattg 20513299  T
Q  204 ataccactctattatggtactaag 227  Q
    ||||||||||||||||||||||||    
T  20513300 ataccactctattatggtactaag 20513323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 33723021 - 33722803
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||||||||||||| | ||||||||||||||| ||  |||||||||||||||| ||||||| | ||| ||||||||| |||||  ||||||    
T  33723021 taggctgagtcgcggactaggtcactctctttaagacgtttcgtgacactgtccaaaattgtgcaagcagaccatcgaccacgacgtccccaggataaaa 33722922  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    ||||||| |||||| ||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||| |    
T  33722921 cagcccagctacaactgtatcagagtcctattgcactataagatctgttctagaaatacaccttcaaatat--tgctaagaccactccaatatggtatag 33722824  T
Q  204 ataccactctattatggtact 224  Q
    |||||||| ||||||||||||    
T  33722823 ataccactttattatggtact 33722803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 227
Target Start/End: Complemental strand, 55081769 - 55081581
Alignment:
Q  39 acgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgca 138  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||| |||| || ||  |||||||||| || |||||| ||||||| |||  ||||| |    
T  55081769 acgttttgtagcactgctcaaaattgtacaagcagactatcaaccatgacgtcctcaggataaaacagctcagctacaactgtatcagagtcttattgta 55081670  T
Q  139 ctgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
    || ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55081669 ctataggatctgttctagaaatacaccttccaatatggttctaagaccactccaatatggtattgataccactctattatggtactaag 55081581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16596038 - 16595818
Alignment:
Q  1 tattaggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatata 100  Q
    ||||||||| | ||||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||| |||||  |||    
T  16596038 tattaggctgagtcgcggattaggtcgctctctttaagacgttttgtggcactgtccaaaattgtgcaagcagactgtcaaccacgacgtccccaggata 16595939  T
Q  101 aaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggta 200  Q
    ||||| | || ||||||| | |||      |||||||||| || |||||||||||||||||||||||| |||||||   ||||||||||  |||||||||    
T  16595938 aaacaactcagctacaaaagaatc------ctattgcactataagatctgttctagaaatacaccttccaatatggctttaagaccacttcaatatggta 16595845  T
Q  201 ttgataccactctattatggtactaag 227  Q
    |||||||||||||||||||||||||||    
T  16595844 ttgataccactctattatggtactaag 16595818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 15020567 - 15020352
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||| |||||||| || |||||||| |||||| ||  ||||  |||||||||| ||| ||| |||||||||||||||| ||||  ||||||    
T  15020567 taggctgaatcgcagactaggttgctctctttaaaacgtttcgtgacacttcccaaaattgtgcaaacagactatcaaccacgacgctcccaggataaaa 15020468  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    |||| ||||||||| ||||||| |||   |||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||    
T  15020467 cagcacaactacaattgtatcagagtctcattgcactataggatatgttctagaaatacaccttcaaatatggtacgaagaccactccaatttggtattg 15020368  T
Q  204 ataccactctattatg 219  Q
    ||||||||||||||||    
T  15020367 ataccactctattatg 15020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 39991953 - 39991783
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaa-ttgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaag 128  Q
    ||||||||||  ||||||||||||  |||||| |||| ||| ||| |||| ||| |||||||| |||| ||||| |||  ||||||||| ||||| | ||    
T  39991953 ctctttaagatattttgtagcactacccaaaaattgtgcaatcagactataaactacgacgcctccaagataaa-cagtacaactacaactgtattatag 39991855  T
Q  129 ttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggta 200  Q
    |  || |||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39991854 tcttactgcattgtaggatccgttctagatatagaccttcaaatatggtgctaagaccactctaatatggta 39991783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 2575340 - 2575161
Alignment:
Q  21 taggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatg 120  Q
    |||||||  |||||||| |||||||||||||||| | |||||| | |||||||  |||||||||||||  ||| | || ||| |||| || |||||| |     
T  2575340 taggtcgttctctttaatacgttttgtagcactgcctaaaattatgcaagcagaatatcaaccacgacttccctagtagaaagcagctcagctacaacta 2575241  T
Q  121 tatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggta 200  Q
    ||||  |||  ||||||||| ||| || ||||||| ||||||||||||||||||||| ||||||||||| | ||||||||    
T  2575240 tatctgagtcatattgcactatagaatatgttctaaaaatacaccttcaaatatggtactaagaccacttttatatggta 2575161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 40684921 - 40684733
Alignment:
Q  15 gcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaacta 114  Q
    ||||| |||| ||| || ||||||||||||||  | |||||| ||||| || ||||||| ||||||| ||||||| ||| |  |||||||| | || |||    
T  40684921 gcggattaggccgctctttttaagacgttttgcggtactgtctaaaatcgtgcaagcagactatcaatcacgacgtccc-aggataaaacaactcaccta 40684823  T
Q  115 caaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattga 204  Q
    ||| ||||||| ||| ||||| |||  ||| || |||| || ||||||||||| ||||||||||||||||| |||| |||| | ||||||    
T  40684822 caactgtatcagagtcctattacaccatagaatttgttttataaatacacctttaaatatggtgctaagacaactccaatacgatattga 40684733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 5271503 - 5271332
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||| || |||||||||| |    
T  5271503 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaacaagtccaactacaact 5271404  T
Q  120 gtatcaaagtt--ctattgcactgtaggatct-gttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    || | |   ||  |||||||||||||| |  | |||| |||| ||||||| ||||||||||||||||||||||||    
T  5271403 gtttga---ttcactattgcactgtagaaaatcgttcgagaattacacctccaaatatggtgctaagaccactct 5271332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 9931425 - 9931524
Alignment:
Q  113 tacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactc 212  Q
    ||||| ||||||||| | ||  |||| ||||||||| ||| ||||||||||| || |||||||||| ||||||||||| || |||||||| | |||||||    
T  9931425 tacaactgtatcaaactcctgctgcattgtaggatccgttttagaaatacactttgaaatatggtgttaagaccactccaacatggtattaagaccactc 9931524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 31273532 - 31273629
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  31273532 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 31273629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 13522076 - 13521992
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  13522076 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 13521992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 55251741 - 55251832
Alignment:
Q  33 tttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaaatgta 122  Q
    |||||||||||| || ||||||||||||||||| |||| ||| |||||||||||| | || |||  ||||||| ||||||||||||| ||||    
T  55251741 tttaagacgtttcgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacctccaggataaaacaagcccaactacaactgta 55251832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 8030560 - 8030459
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| ||||  || |||||||| |||  ||| |||  ||||||| |||||| ||||||||    
T  8030560 aggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagatagactatcaacaacgctgcctccaggataaaacaagcccagctacaaat 8030461  T
Q  120 gt 121  Q
    ||    
T  8030460 gt 8030459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 19906444 - 19906481
Alignment:
Q  184 accactctaatatggtattgataccactctattatggt 221  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19906444 accactctaatatggtattgttaccactctattatggt 19906481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 37264648 - 37264551
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||| |||||||| | ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  37264648 aggtcgctctctttaagacgtttcgtggcactgcccaaaattatgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 37264551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 31269045 - 31269129
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| | |||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  31269045 aggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 31269129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 31765905 - 31765981
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  31765905 ctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 31765981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 48276728 - 48276685
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgt 65  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||    
T  48276728 aggtcgctctctttaagacgttttgttgcactgttcaaaattgt 48276685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 13059603 - 13059640
Alignment:
Q  184 accactctaatatggtattgataccactctattatggt 221  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  13059603 accactttaatatggtattgttaccactctattatggt 13059640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 31766004 - 31766041
Alignment:
Q  184 accactctaatatggtattgataccactctattatggt 221  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  31766004 accactttaatatggtattgttaccactctattatggt 31766041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 33469061 - 33468992
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||||||||  |||||||||||||||||| |||||| ||||| |||| ||| |||| || |||||||||    
T  33469061 gactaggtcgttctctttaagacgttttgtggcactgcccaaagttgtgcaaggcagactgtcaaccacg 33468992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 47244259 - 47244300
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaatt 63  Q
    ||||||||||||||||||||||| || ||||||| |||||||    
T  47244259 aggtcgccctctttaagacgtttcgtggcactgttcaaaatt 47244300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 12823979 - 12823895
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||| ||| || |||||| |||||||||| |||| ||  |||||||||||| |||| |||  ||||||||    
T  12823979 aggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaagacaaactatcaaccacgccgcctccaggataaaaca 12823895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 33463440 - 33463392
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag 70  Q
    ||||||| ||||||||||||||| || |||||||||||| |||| ||||    
T  33463440 aggtcgctctctttaagacgtttcgtggcactgtccaaagttgtgcaag 33463392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 14104584 - 14104806
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||||||||||||||| ||||||||||||||| ||  |||||  ||||||||| ||| ||  ||||||||||||||| |||||  ||||||    
T  14104584 taggctgagtcgcggactaggtcgctctctttaagacgtttcgtgtcactgctcaaaattgtgcaaacaaactatcaaccacgacgtccccatgataaaa 14104683  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    ||||| | |||||| ||||||| ||| |||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||     
T  14104684 cagcctagctacaactgtatcagagtcctattgcactataggatatgttctagaaatacaccttccaatatggttctaagaccactccaatatggtattc 14104783  T
Q  204 ataccactctattatggtactaa 226  Q
    |||||||||||||||||||||||    
T  14104784 ataccactctattatggtactaa 14104806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 44957525 - 44957316
Alignment:
Q  17 ggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactaca 116  Q
    |||||||||||  |||||||||||||||||| ||||||   |||||||| ||||||| ||||||||||||||  | |||  ||||||||| ||  |||||    
T  44957525 ggactaggtcgttctctttaagacgttttgtggcactgcaaaaaattgtgcaagcagactatcaaccacgacatctccaggataaaacagtcctgctaca 44957426  T
Q  117 aatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctatt 216  Q
    | ||||||| ||| |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  44957425 actgtatcagagtcctattgcactatataatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatgacattgataccactctatt 44957326  T
Q  217 atggtactaa 226  Q
    ||||||||||    
T  44957325 atggtactaa 44957316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13060473 - 13060250
Alignment:
Q  1 tattaggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatata 100  Q
    ||||||||| | || |||||||||||||  || |||||||| ||||| |||| | | ||||||||  ||| || |||||||| | |||| ||| || ||     
T  13060473 tattaggctgagtcacggactaggtcgctttcattaagacgatttgttgcaccgccaaaaattgtgaaagaagactatcaacaatgacgtccctaagatg 13060374  T
Q  101 aaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaat-acaccttcaaatatggtgctaagaccactctaatatggt 199  Q
    ||||| | ||||||||| ||||||| ||| ||| |||| ||||||||| ||||||| ||| |||| |||||||||||| |||||||||||  |||||| |    
T  13060373 aaacaactcaactacaactgtatcagagtcctactgcattgtaggatccgttctagtaataacacattcaaatatggtactaagaccactgcaatatgat 13060274  T
Q  200 attgataccactctattatggtac 223  Q
    |||  |||||||||| ||||||||    
T  13060273 atttttaccactctactatggtac 13060250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 41559050 - 41558902
Alignment:
Q  76 tatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaa-tat 174  Q
    |||||| ||||||| ||||   |||||||||  ||||| ||| |||||||||||   |||||| |||||||||  ||||||||  ||||||||||| |||    
T  41559050 tatcaatcacgacgtccccgtgataaaacagttcaactgcaactgtatcaaagtctaattgcattgtaggatccattctagaac-acaccttcaaaatat 41558952  T
Q  175 ggtgctaagaccactctaatatggtattgataccactctattatggtact 224  Q
    |||| ||||||||||  ||||| |||| |||| |||||||||||||||||    
T  41558951 ggtgataagaccacttcaatatagtatcgatatcactctattatggtact 41558902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 9180808 - 9180711
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  9180808 aggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 9180711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 30650943 - 30651037
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    |||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||| ||||||| |||||| ||||||    
T  30650943 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaagataaaacaagcccagctacaa 30651037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 9189879 - 9189790
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||||||||||| || ||||||||||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  9189879 ctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 9189790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 1935077 - 1934993
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  1935077 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 1934993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 10160808 - 10160724
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  10160808 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 10160724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 12796939 - 12797001
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacg 86  Q
    |||| |||||||||||||||||| |||||| |||||||||| |||| ||| ||||||||||||    
T  12796939 tcgctctctttaagacgttttgtggcactgcccaaaattgttcaagacagactatcaaccacg 12797001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 25478381 - 25478284
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| ||  ||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  25478381 aggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataaaacaagcccagctacaa 25478284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 25497409 - 25497312
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| ||| ||||| ||||| |||| |||| ||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  25497409 aggtcgctctctttaagacgtttcgtaacactgcccaaatttgtgcaagtcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 25497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 19892550 - 19892466
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| |||||||||||||||  | ||||||||||||||||| |||  ||| |||||||||||| |||| |||  ||||||||    
T  19892550 aggtcgctctctttaagacgtttcctggcactgtccaaaattgtgcaacacagactatcaaccacgccgcctccaggataaaaca 19892466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 29677394 - 29677462
Alignment:
Q  24 gtcgccctctttaagacgttttgtagcactgtccaaaattgtac-aagcaggctatcaaccacgacgcc 91  Q
    ||||| ||||||||||||||| || |||||| |||||||||| | |||||| |||||||||||| ||||    
T  29677394 gtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaagcagactatcaaccacgccgcc 29677462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 35601933 - 35602017
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| || |||||||||||| || ||||||||||||||||| |||| |||  ||||||||||| |||| |||  ||||||||    
T  35601933 aggtcgctctttttaagacgtttcgtggcactgtccaaaattgtgcaagacagagtatcaaccacgccgcctccaggataaaaca 35602017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 18344442 - 18344611
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||| ||||||| || | |||  ||||||| |||||| |||||| |    
T  18344442 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccggctccaggataaaacaagcccagctacaact 18344541  T
Q  120 gtatcaaagttctattgcactgtaggatct-gttctagaaatacaccttcaaatatggtgctaagaccact 189  Q
    || || |    ||| |||||||||| |  | |||| |||| ||||||| |||||||||| |||||||||||    
T  18344542 gt-tcgattaactactgcactgtagaaaatcgttcgagaattacacctccaaatatggtactaagaccact 18344611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 28603309 - 28603374
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacg 86  Q
    ||||||| |||||||| |||||| ||  |||||||||||||||| |||| ||| ||||||||||||    
T  28603309 aggtcgctctctttaaaacgtttcgtgacactgtccaaaattgtgcaagacagactatcaaccacg 28603374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 31326750 - 31326847
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||  |  ||||| |||||||||| ||| |||| |||||||||||| | || |||  ||||||| |||||||||||||    
T  31326750 aggtcgctctctttaagacgtttcatgccactgcccaaaattgtgcaaggcagactatcaaccacgccacctccaggataaaacaagcccaactacaa 31326847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 31326932 - 31326969
Alignment:
Q  184 accactctaatatggtattgataccactctattatggt 221  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  31326932 accactttaatatggtattgttaccactctattatggt 31326969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 29433504 - 29433452
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgt 65  Q
    |||| ||||| ||||| ||||| |||||||||||||| |||||| ||||||||    
T  29433504 tcgcagactaagtcgctctcttcaagacgttttgtagtactgtctaaaattgt 29433452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 30658274 - 30658358
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||   ||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  30658274 aggtcgctctctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 30658358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 35639081 - 35638997
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| || |||||||||||| || |||||| |||||||||| |||| |||  ||||||||||| |||| |||  ||||||||    
T  35639081 aggtcgctctttttaagacgtttcgtggcactgcccaaaattgtgcaagacagcgtatcaaccacgccgcctccaggataaaaca 35638997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 29478256 - 29478033
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | ||| |||||| ||||| ||||| ||||||||| || |||||| |||||||||| ||| ||| |||||||||| ||||||| ||  ||||||    
T  29478256 taggctgagtcgtggactaagtcgctctcttcaagacgtttcgtggcactgcccaaaattgtgcaaacagactatcaaccatgacgcccacatgataaaa 29478157  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
     |||||| ||||||  |||||| |||  ||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29478156 tagcccagctacaacagtatcatagtcatattgcaccacaggatatgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 29478057  T
Q  204 ataccactctattatggtactaag 227  Q
    ||||||||||||||| ||||||||    
T  29478056 ataccactctattatagtactaag 29478033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 6898457 - 6898262
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | ||||||||||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||  |||||     
T  6898457 taggctgagtcgcggactagatcgctctctttaagatgttttgtggcactgtccaaaattgtgcaagcagactatcaaccacaacgtccccaggataaa- 6898359  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggta 200  Q
    || |||| | |||| ||||||| ||| |||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||    
T  6898358 caacccagcaacaactgtatcagagtcctattgcactataggatctgttctaaaaatacaccttccaatatgatgctaagaccactcttatatggta 6898262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 23616434 - 23616265
Alignment:
Q  53 tgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgtt 152  Q
    ||||||||||||| ||||||  ||||||||||||||| || ||  |||||||| | ||||||||| ||||||| | | ||| |||||| |||||||  ||    
T  23616434 tgtccaaaattgtgcaagcatactatcaaccacgacgtcctcatgataaaacaactcaactacaattgtatcagaatcctactgcactataggatccatt 23616335  T
Q  153 ctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctattatggta 222  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||| || |||||||    
T  23616334 ctagaaattcaccttcaaatatggtgctaagaccactctattatggtactgagaccactataatatggta 23616265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 25832393 - 25832241
Alignment:
Q  75 ctatcaaccacgacgcccccaatataaaacagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatat 174  Q
    |||||||||||||||||||||  |||||||| |||| |||||| ||||||| |||  |||| |||| ||| ||||||| ||||||||||| || ||||||    
T  25832393 ctatcaaccacgacgcccccatgataaaacaacccacctacaactgtatcagagtcatattacactatagaatctgttatagaaatacacttttaaatat 25832294  T
Q  175 ggtgctaagaccactctaatatggtattgataccactctattatggtactaag 227  Q
    |||| ||||||||||| |||||| |||| ||  |||||||||||| |||||||    
T  25832293 ggtgttaagaccactccaatatgatattaatgtcactctattatgatactaag 25832241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 1289417 - 1289214
Alignment:
Q  21 taggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagccc---aactacaa 117  Q
    |||||||| ||||||||||||||||||  ||||   ||||||| | ||||||| ||||||||||| |||||  ||| |||||||  ||    | ||||||    
T  1289417 taggtcgctctctttaagacgttttgtgacactactcaaaattatgcaagcagactatcaaccacaacgccttcaagataaaacttccagctagctacaa 1289318  T
Q  118 atgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactctatta 217  Q
     |||||| | ||  || |||||||||||||| |||| | ||| ||||||| ||||||||| |||||||||||  | ||||||||||||| ||||||||||    
T  1289317 ttgtatcgatgtcttactgcactgtaggatccgttccaaaaa-acacctttaaatatggttctaagaccacttcattatggtattgatagcactctatta 1289219  T
Q  218 tggta 222  Q
    |||||    
T  1289218 tggta 1289214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 20130430 - 20130215
Alignment:
Q  13 tcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgccc----ccaat-ataaaacagc 107  Q
    |||||||||||||| |  | ||||| || ||| ||| || ||||||||||||| ||||||  ||||||| || |||||||    || || |||||||| |    
T  20130430 tcgcggactaggtctctatatttaaaacatttcgtatcattgtccaaaattgtgcaagcaaactatcaagcatgacgcccgacccctatgataaaacaac 20130331  T
Q  108 ccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgatac 207  Q
     ||||||||| ||||||| |||  || || ||||||||||| ||||  ||||||||| || ||||||||||||||||||||||   |||||||||  |||    
T  20130330 tcaactacaactgtatcagagtcttactgtactgtaggatccgttcatgaaatacacttttaaatatggtgctaagaccactccgttatggtatttctac 20130231  T
Q  208 cactctattatggtac 223  Q
    ||||||| ||||||||    
T  20130230 cactctagtatggtac 20130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8268304 - 8268369
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacg 86  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||    
T  8268304 aggtcgctctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacg 8268369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 44510753 - 44510677
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  44510753 ctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 44510677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 4579519 - 4579603
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  4579519 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 4579603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 9651051 - 9650967
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  9651051 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 9650967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 23866079 - 23866163
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  23866079 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 23866163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 4343370 - 4343328
Alignment:
Q  141 gtaggatctgttctagaaatacaccttcaaatatggtgctaag 183  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  4343370 gtaggatccgttctaaaaatacaccttcaaatatggtgctaag 4343328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 4930244 - 4930341
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||| ||||||||||  ||| ||  |||||||||||| |||| |||  ||||||| |||||||||||||    
T  4930244 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagtcatactatcaaccacgccgcctccaggataaaacaagcccaactacaa 4930341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 4338976 - 4338929
Alignment:
Q  175 ggtgctaagaccactctaatatggtattgataccactctattatggtac 223  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||    
T  4338976 ggtgctaagacaactctaatatggtattaataccactct-ttatggtac 4338929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 23247017 - 23246933
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| |||||||||| |||| || |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  23247017 aggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 23246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 26341210 - 26341294
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||| ||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  26341210 aggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 26341294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 4339759 - 4339717
Alignment:
Q  141 gtaggatctgttctagaaatacaccttcaaatatggtgctaag 183  Q
    |||||||| |||||| ||||||||||| |||||||||||||||    
T  4339759 gtaggatccgttctaaaaatacacctttaaatatggtgctaag 4339717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 6591054 - 6590997
Alignment:
Q  35 taagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcc 91  Q
    ||||||||||||| |||||||| |||||||| ||| |||| |||||||||||| ||||    
T  6591054 taagacgttttgtggcactgtctaaaattgtgcaaggcagactatcaaccacgccgcc 6590997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8076061 - 8076126
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacg 86  Q
    ||||||| ||||||||||||||| || |||||| | |||||||| |||| ||| ||||||||||||    
T  8076061 aggtcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaagacagactatcaaccacg 8076126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 10388268 - 10388231
Alignment:
Q  184 accactctaatatggtattgataccactctattatggt 221  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  10388268 accactttaatatggtattgttaccactctattatggt 10388231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 44423218 - 44423137
Alignment:
Q  25 tcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    |||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||| ||| |||| |||  ||||||||    
T  44423218 tcgctctctttaagacgtttcgtggcactgaccaaaattgttcaaggcagactatcaactacgccgcctccaggataaaaca 44423137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 27238253 - 27238337
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| |||||||||||||||||| ||||||  |||||||||  || |||| ||||||| |||| ||||  ||| ||||||||    
T  27238253 aggtcgctctctttaagacgttttgtggcactgctcaaaattgtgtaaggcagactatcaatcacgccgcctgcaagataaaaca 27238337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 18265595 - 18265383
Alignment:
Q  15 gcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaacagcccaacta 114  Q
    |||||||||||||| ||||||||||||||||||  ||||| | |||||||| ||| ||| ||||||||||||||| |||||  |||||||||| || |||    
T  18265595 gcggactaggtcgctctctttaagacgttttgtgacactgcctaaaattgtgcaatcagactatcaaccacgacgtccccatgataaaacagctcagcta 18265496  T
Q  115 caaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattgataccactcta 214  Q
    ||| ||||||| |||  ||||| ||| || |||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||||| || || |    
T  18265495 caactgtatcagagtcttattgtactctatgatctgttatagaaatacaccttccaatatggtgctaagaccaatccaatatggtattgatatcattcaa 18265396  T
Q  215 ttatggtactaag 227  Q
    |||||||||||||    
T  18265395 ttatggtactaag 18265383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 1286366 - 1286144
Alignment:
Q  4 taggcttattcgcggactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaagcaggctatcaaccacgacgcccccaatataaaa 103  Q
    |||||| | |||||||||| | ||| ||||||||||| ||| || ||| || | |||||||| |||  ||  ||| |||||||||| | |||  ||||||    
T  1286366 taggctgagtcgcggactatgccgctctctttaagacattt-gtggcattgccgaaaattgtgcaactagattattaaccacgacgtctccatgataaaa 1286268  T
Q  104 cagcccaactacaaatgtatcaaagttctattgcactgtaggatctgttctagaaatacaccttcaaatatggtgctaagaccactctaatatggtattg 203  Q
    || | || |||||| | ||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  1286267 caactcagctacaactctatcagagtcctattgcactataggatctgttctagaaatacacattcaaatatggtgctaagaccactccaatatggtattg 1286168  T
Q  204 ataccactctattatggtactaag 227  Q
    ||||||||||||||||||||||||    
T  1286167 ataccactctattatggtactaag 1286144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 12103036 - 12103137
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||||||||||||    
T  12103036 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccaactacaaat 12103135  T
Q  120 gt 121  Q
    ||    
T  12103136 gt 12103137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 29168057 - 29167886
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| ||||||||||||| |    
T  29168057 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccaactacaact 29167958  T
Q  120 gtatcaaagttctattgcactgtaggatct-gttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    || || |    ||| |||||||||| |  | |||| |||| ||||||| |||||||||| |||||||||||||    
T  29167957 gt-tcgattaactactgcactgtagaaaatcgttcgagaattacacctccaaatatggtactaagaccactct 29167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 556706 - 556878
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| ||| || |||||| |    
T  556706 aggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagctcagctacaact 556805  T
Q  120 gtatcaaagttctattgcactgtag-gatctgttctagaaatacaccttcaaatatggtgctaagaccactcta 192  Q
    || || |    ||| ||||||||||  | | |||| |||| ||||||| |||||||||| ||||||||||||||    
T  556806 gt-tcgattaactactgcactgtagaaaaccgttcgagaattacacctccaaatatggtactaagaccactcta 556878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 561478 - 561650
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| ||| || |||||| |    
T  561478 aggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagctcagctacaact 561577  T
Q  120 gtatcaaagttctattgcactgtag-gatctgttctagaaatacaccttcaaatatggtgctaagaccactcta 192  Q
    || || |    ||| ||||||||||  | | |||| |||| ||||||| |||||||||| ||||||||||||||    
T  561578 gt-tcgattaactactgcactgtagaaaaccgttcgagaattacacctccaaatatggtactaagaccactcta 561650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 6155503 - 6155332
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| || ||||||||||||||| |||||| ||| |||||||||||  |||| |||  ||||||| |||||| |||||| |    
T  6155503 aggtcgctctctttaagacgtttcgtggcactgtccaaaattttacaagacagactatcaaccacaccgcctccaggataaaacaagcccagctacaact 6155404  T
Q  120 gtatcaaagttctattgcactgtag-gatctgttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    || || |    ||| ||||||||||  | | |||| |||| ||||||| |||||||||| |||||||||||||    
T  6155403 gt-tcgattaactactgcactgtagaaaaccgttcgagaattacacctccaaatatggtactaagaccactct 6155332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 32461633 - 32461549
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  32461633 aggtcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 32461549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 7451769 - 7451834
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||||| ||||||||||||||| || ||||||||||||||||| ||| |||| ||||||||||||    
T  7451769 aggtcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacg 7451834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 35679959 - 35679862
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||||| |||||||| ||| |||| |||||||||||| |||| |||  ||||||| ||| |||||||||    
T  35679959 aggtcgctctctttaagacgtttcgtggcactgtcaaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagctcaactacaa 35679862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 12045223 - 12045139
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||||||||||| || |||||| |||||||||| |||| ||| ||||| |||||| |||| |||  ||||||||    
T  12045223 aggtcgccctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcgaccacgccgcctccaggataaaaca 12045139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 26667283 - 26667367
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  26667283 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 26667367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 26938880 - 26938964
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  26938880 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 26938964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 3665939 - 3666008
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||||||||| ||||| ||||||||| || |||||| |||||||||| ||| |||| ||||||||||||    
T  3665939 gactaggtcgctctcttcaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacg 3666008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 10759893 - 10759820
Alignment:
Q  33 tttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  10759893 tttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 10759820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 12501983 - 12501886
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtac-aagcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| | || ||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  12501983 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaaacagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 12501886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 36423648 - 36423819
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| |  |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| |||| | |    
T  36423648 aggtcgctctctttaagacgtttcgcggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataaaacaagcccagctactact 36423747  T
Q  120 gtatca--aagttctattgcactgtaggatct-gttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    || | |  ||   ||| |||||||||| |  | |||| |||| ||||||| ||||||||||||||||||||||||    
T  36423748 gtttgattaa---ctaatgcactgtagaaaatcgttcgagaattacacctccaaatatggtgctaagaccactct 36423819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 36428720 - 36428817
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||||  | |||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  36428720 aggtcgctctctttaagacgttttgcggaactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 36428817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 36937595 - 36937498
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  36937595 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 36937498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 36942349 - 36942252
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| |||||||||||||||  | |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  36942349 aggtcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 36942252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 41996684 - 41996773
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||||||||||| || |||||| ||||||||||  ||| ||| |||||||||||| |||| |||  ||||||| |||||||||||||    
T  41996684 ctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcctccaggataaaacaagcccaactacaa 41996773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 42001445 - 42001542
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaac-agcccaactacaa 117  Q
    ||||||| ||||||||||||||| || |||||| ||||||||||  ||| ||| |||||||||||| |||| |||  ||||||| |||||| ||||||    
T  42001445 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 42001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 12102919 - 12102867
Alignment:
Q  18 gactaggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag 70  Q
    ||||||||||| ||||||||||| |||||| |||||| |||||||||| ||||    
T  12102919 gactaggtcgctctctttaagactttttgtggcactggccaaaattgtgcaag 12102867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 39523060 - 39523144
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||| | |||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  39523060 aggtcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 39523144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 37652914 - 37652849
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacg 86  Q
    ||||||| ||||||||||||||| ||  || ||||||||||||| ||| |||| ||||||||||||    
T  37652914 aggtcgctctctttaagacgtttcgtgacattgtccaaaattgtgcaaggcagactatcaaccacg 37652849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 6514677 - 6514601
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| || |||||| |||||||| | ||| |||| |||||||||||| |||| |||  ||||||||    
T  6514677 ctctttaagacgtttcgtggcactgcccaaaattttgcaaggcagactatcaaccacgccgcctccaggataaaaca 6514601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 11981362 - 11981314
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag 70  Q
    |||||||  ||||||||||||||||| |||||| |||||||||| ||||    
T  11981362 aggtcgctttctttaagacgttttgtggcactgcccaaaattgtgcaag 11981314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 39518421 - 39518505
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtaca-agcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||| | |||||||||| ||  |||| |||||||||||| |||| |||  ||||||||    
T  39518421 aggtcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcatggcagactatcaaccacgccgcctccaggataaaaca 39518505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 41587236 - 41587160
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| ||  |||||| ||||||||| |||| ||| |||||||||||| |||| |||  ||||||||    
T  41587236 ctctttaagacgtttcgtgacactgttcaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 41587160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 9971 - 9799
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| |||||| |    
T  9971 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 9872  T
Q  120 gtatcaaagttctattgcactgtag-gatctgttctagaaatacaccttcaaatatggtgctaagaccactcta 192  Q
    || || |    ||| ||||||||||  | | |||| |||| ||||||| |||||||||| ||||||||||||||    
T  9871 gt-tcgattaactactgcactgtagaaaaccgttcgagaattacacctccaaatatggtactaagaccactcta 9799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 7115 - 7199
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  7115 aggtcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 7199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 4085 - 4256
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaac-agcccaactacaaat 119  Q
    ||||||| ||||||||||| ||| || |||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||| |||||| |||||| |    
T  4085 aggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 4184  T
Q  120 gtatcaaagttctattgcactgtaggatct-gttctagaaatacaccttcaaatatggtgctaagaccactct 191  Q
    || || |    ||| |||||||||| |  | |||| |||| ||||||| |||||||||| |||||||||||||    
T  4185 gt-tcgattaactactgcactgtagaaaatcgttcgagaattacacctccaaatatggtactaagaccactct 4256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 35653 - 35729
Alignment:
Q  30 ctctttaagacgttttgtagcactgtccaaaattgtacaa-gcaggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||||||||||| ||  ||||| |||||||||| ||| |||| |||||||||||| |||| |||  ||||||||    
T  35653 ctctttaagacgtttcgtgacactggccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 35729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 166170 - 166086
Alignment:
Q  22 aggtcgccctctttaagacgttttgtagcactgtccaaaattgtacaag-caggctatcaaccacgacgcccccaatataaaaca 105  Q
    ||||||| ||||||||||||||| || |||||| | |||||||| |||| ||  |||||||||||| |||| |||  ||||||||    
T  166170 aggtcgctctctttaagacgtttcgtggcactgccaaaaattgtgcaagacatactatcaaccacgccgcctccaggataaaaca 166086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University