View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_26 (Length: 241)

Name: NF11650_low_26
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_26
NF11650_low_26
[»] chr2 (12 HSPs)
chr2 (19-241)||(40059194-40059416)
chr2 (19-140)||(40085207-40085316)
chr2 (175-241)||(40085132-40085198)
chr2 (183-241)||(40077222-40077280)
chr2 (19-53)||(1830154-1830188)
chr2 (19-53)||(7103394-7103428)
chr2 (19-53)||(23974414-23974448)
chr2 (19-53)||(33197182-33197216)
chr2 (19-53)||(42419908-42419942)
chr2 (20-53)||(10619141-10619174)
chr2 (24-53)||(37419588-37419617)
chr2 (19-55)||(21616579-21616615)
[»] chr7 (6 HSPs)
chr7 (78-128)||(35052814-35052864)
chr7 (19-53)||(30812253-30812287)
chr7 (19-53)||(44822073-44822107)
chr7 (25-54)||(7612551-7612580)
chr7 (22-54)||(9210939-9210971)
chr7 (17-53)||(35808871-35808907)
[»] chr3 (7 HSPs)
chr3 (19-55)||(26911706-26911742)
chr3 (19-53)||(25447166-25447200)
chr3 (19-52)||(33405114-33405147)
chr3 (19-53)||(26990146-26990180)
chr3 (19-53)||(31615481-31615515)
chr3 (78-128)||(53322651-53322700)
chr3 (24-53)||(32582857-32582886)
[»] chr4 (9 HSPs)
chr4 (21-53)||(52315118-52315150)
chr4 (22-53)||(52428782-52428813)
chr4 (19-53)||(22662172-22662206)
chr4 (19-53)||(22666651-22666685)
chr4 (19-53)||(25571374-25571408)
chr4 (19-53)||(27043751-27043785)
chr4 (19-53)||(41336875-41336909)
chr4 (24-53)||(3891711-3891740)
chr4 (25-53)||(7367975-7368003)
[»] chr1 (9 HSPs)
chr1 (19-54)||(17009502-17009537)
chr1 (19-54)||(30257799-30257834)
chr1 (19-53)||(6292607-6292641)
chr1 (24-53)||(172494-172523)
chr1 (23-52)||(2522715-2522744)
chr1 (24-53)||(29045854-29045883)
chr1 (24-53)||(30014000-30014029)
chr1 (24-52)||(5894113-5894141)
chr1 (25-53)||(23445454-23445482)
[»] chr8 (2 HSPs)
chr8 (19-53)||(38602442-38602476)
chr8 (24-53)||(10727464-10727493)
[»] chr6 (3 HSPs)
chr6 (19-53)||(4308892-4308926)
chr6 (19-53)||(30536886-30536920)
chr6 (19-48)||(7351597-7351626)
[»] chr5 (9 HSPs)
chr5 (19-53)||(9107205-9107239)
chr5 (78-128)||(12735614-12735664)
chr5 (78-128)||(12798441-12798491)
chr5 (19-53)||(32010060-32010094)
chr5 (19-53)||(32197848-32197882)
chr5 (19-49)||(40111383-40111413)
chr5 (24-53)||(40335794-40335823)
chr5 (26-54)||(12334278-12334306)
chr5 (21-53)||(14932413-14932445)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 40059416 - 40059194
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaatgagtcaaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttg 118  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059416 atgtcagtagataaactcaaataagtcaatccaaacgagtctaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttg 40059317  T
Q  119 ttttcttttcctgcaagcaatgcaaacttttccttcacacatgaacaaattcaatacaatgctaaaagaaaatggtaagaatgtgagagaagaaatgaag 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40059316 ttttctttttctgcaagcaatgcaaacttttccttcacacatgaacaaattcaatacaatgctcaaagaaaatggtaagaatgtgagagaagaaatgaag 40059217  T
Q  219 caaagagatcctggcctttaaca 241  Q
    |||||||| ||||||||||||||    
T  40059216 caaagagaacctggcctttaaca 40059194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 40085316 - 40085207
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaatgagtcaaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttg 118  Q
    ||||||||||||||||||||||||||||||||            |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40085316 atgtcagtagataaactcaaataagtcaatcc------------aaacttgttcagtcatgctttcaacaattagcaattcagcttaacatagacacttg 40085229  T
Q  119 ttttcttttcctgcaagcaatg 140  Q
    ||||||||||||||||||||||    
T  40085228 ttttcttttcctgcaagcaatg 40085207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 40085198 - 40085132
Alignment:
Q  175 caatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagatcctggcctttaaca 241  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  40085198 caatgctcaaagaaaatggtaagaatgtaagagaagaaatgaagcaaagagaacctggcctttaaca 40085132  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 40077280 - 40077222
Alignment:
Q  183 aaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagatcctggcctttaaca 241  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  40077280 aaagaaagtggtaaaaatgtgagagaagaaatgaagcaaagagaacctggcctttaaca 40077222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 1830154 - 1830188
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||| |||||||||||||||||||||||||    
T  1830154 atgtcagtaaataaactcaaataagtcaatccaaa 1830188  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 7103428 - 7103394
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  7103428 atgtcaatagataaactcaaataagtcaatccaaa 7103394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 23974448 - 23974414
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||||| ||||||||||||||||||    
T  23974448 atgtcagtagataaacccaaataagtcaatccaaa 23974414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 33197216 - 33197182
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||| ||||||||||||||||||||||||||    
T  33197216 atgtcagttgataaactcaaataagtcaatccaaa 33197182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 42419908 - 42419942
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||| |||||||||||||||||||||||||||    
T  42419908 atgtcagaagataaactcaaataagtcaatccaaa 42419942  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 10619174 - 10619141
Alignment:
Q  20 tgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||| ||||||||||||    
T  10619174 tgtcagtagataaactcaaatgagtcaatccaaa 10619141  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 37419617 - 37419588
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  37419617 agtagataaactcaaataagtcaatccaaa 37419588  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21616615 - 21616579
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaatg 55  Q
    |||||||| |||||||| |||||||||||||||||||    
T  21616615 atgtcagtggataaactgaaataagtcaatccaaatg 21616579  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 35052814 - 35052864
Alignment:
Q  78 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 128  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  35052814 tgctttcaacaattagcaattcagcttaacatacacacttgttttcttttc 35052864  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 30812253 - 30812287
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  30812253 atgtcagtaggtaaactcaaataagtcaatccaaa 30812287  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 44822073 - 44822107
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||| |||||||||||||||||||||||||||    
T  44822073 atgtcagcagataaactcaaataagtcaatccaaa 44822107  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 7612551 - 7612580
Alignment:
Q  25 gtagataaactcaaataagtcaatccaaat 54  Q
    ||||||||||||||||||||||||||||||    
T  7612551 gtagataaactcaaataagtcaatccaaat 7612580  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 9210939 - 9210971
Alignment:
Q  22 tcagtagataaactcaaataagtcaatccaaat 54  Q
    ||||||||||| |||||||||||||||||||||    
T  9210939 tcagtagataagctcaaataagtcaatccaaat 9210971  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 35808907 - 35808871
Alignment:
Q  17 tgatgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  35808907 tgatgtcagtagataaactgaaattagtcaatccaaa 35808871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 26911706 - 26911742
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaatg 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  26911706 atgtcagtagataaactcaaataagtcaatccaaatg 26911742  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 25447200 - 25447166
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||||||||||||||||||||||||    
T  25447200 atgtcagtagataaactcaaataagtcaatccaaa 25447166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33405147 - 33405114
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaa 52  Q
    ||||||||||||||||||||||||||||||||||    
T  33405147 atgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 26990180 - 26990146
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  26990180 atgtcagtagataagctcaaataagtcaatccaaa 26990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 31615515 - 31615481
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||| |||||||||||||||||||||||||||||    
T  31615515 atgtccgtagataaactcaaataagtcaatccaaa 31615481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 53322700 - 53322651
Alignment:
Q  78 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 128  Q
    |||||||||||||||||||||| | |||| ||| |||||||||||||||||    
T  53322700 tgctttcaacaattagcaattcagattaa-atacacacttgttttcttttc 53322651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 32582857 - 32582886
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  32582857 agtagataaactcaaataagtcaatccaaa 32582886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 52315150 - 52315118
Alignment:
Q  21 gtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  52315150 gtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 52428782 - 52428813
Alignment:
Q  22 tcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  52428782 tcagtagataaactcaaataagtcaatccaaa 52428813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 22662206 - 22662172
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  22662206 atgttagtagataaactcaaataagtcaatccaaa 22662172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 22666685 - 22666651
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  22666685 atgttagtagataaactcaaataagtcaatccaaa 22666651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 25571374 - 25571408
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||| |||||||||    
T  25571374 atgtcagtagataaactcaaataagccaatccaaa 25571408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 27043785 - 27043751
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  27043785 atgtcagtagataagctcaaataagtcaatccaaa 27043751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 41336875 - 41336909
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  41336875 atgtgagtagataaactcaaataagtcaatccaaa 41336909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 3891711 - 3891740
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  3891711 agtagataaactcaaataagtcaatccaaa 3891740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 7368003 - 7367975
Alignment:
Q  25 gtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||||||||||||||||||    
T  7368003 gtagataaactcaaataagtcaatccaaa 7367975  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 17009537 - 17009502
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaat 54  Q
    |||||||||||||||||||||||||||||| |||||    
T  17009537 atgtcagtagataaactcaaataagtcaattcaaat 17009502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 30257799 - 30257834
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaat 54  Q
    |||||||||||||||||||||||||| |||||||||    
T  30257799 atgtcagtagataaactcaaataagtaaatccaaat 30257834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 6292607 - 6292641
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  6292607 atgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 172523 - 172494
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  172523 agtagataaactcaaataagtcaatccaaa 172494  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 2522715 - 2522744
Alignment:
Q  23 cagtagataaactcaaataagtcaatccaa 52  Q
    ||||||||||||||||||||||||||||||    
T  2522715 cagtagataaactcaaataagtcaatccaa 2522744  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 29045883 - 29045854
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  29045883 agtagataaactcaaataagtcaatccaaa 29045854  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 30014029 - 30014000
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  30014029 agtagataaactcaaataagtcaatccaaa 30014000  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 5894141 - 5894113
Alignment:
Q  24 agtagataaactcaaataagtcaatccaa 52  Q
    |||||||||||||||||||||||||||||    
T  5894141 agtagataaactcaaataagtcaatccaa 5894113  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 23445454 - 23445482
Alignment:
Q  25 gtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||||||||||||||||||    
T  23445454 gtagataaactcaaataagtcaatccaaa 23445482  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 38602442 - 38602476
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||||| ||||||||||||||||||||    
T  38602442 atgtcagtagataagctcaaataagtcaatccaaa 38602476  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 10727464 - 10727493
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  10727464 agtagataaactcaaataagtcaatccaaa 10727493  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 4308892 - 4308926
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||| |||||||||    
T  4308892 atgtcagtagataaactcaaataagccaatccaaa 4308926  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 30536920 - 30536886
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  30536920 atgtaagtagataaactcaaataagtcaatccaaa 30536886  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 7351626 - 7351597
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaat 48  Q
    ||||||||||||||||||||||||||||||    
T  7351626 atgtcagtagataaactcaaataagtcaat 7351597  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 9107205 - 9107239
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  9107205 atgtcactagataaactcaaataagtcaatccaaa 9107239  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 12735614 - 12735664
Alignment:
Q  78 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 128  Q
    |||||||||||||||| ||||| |||||| ||| || ||||||||||||||    
T  12735614 tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc 12735664  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 12798441 - 12798491
Alignment:
Q  78 tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc 128  Q
    |||||||||||||||| ||||| |||||| ||| || ||||||||||||||    
T  12798441 tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc 12798491  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 32010060 - 32010094
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  32010060 atgtgagtagataaactcaaataagtcaatccaaa 32010094  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 32197848 - 32197882
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  32197848 atgtcagtagataaactcaaaaaagtcaatccaaa 32197882  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 40111383 - 40111413
Alignment:
Q  19 atgtcagtagataaactcaaataagtcaatc 49  Q
    |||||||||||||||||||||||||||||||    
T  40111383 atgtcagtagataaactcaaataagtcaatc 40111413  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 40335823 - 40335794
Alignment:
Q  24 agtagataaactcaaataagtcaatccaaa 53  Q
    ||||||||||||||||||||||||||||||    
T  40335823 agtagataaactcaaataagtcaatccaaa 40335794  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 12334306 - 12334278
Alignment:
Q  26 tagataaactcaaataagtcaatccaaat 54  Q
    |||||||||||||||||||||||||||||    
T  12334306 tagataaactcaaataagtcaatccaaat 12334278  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 14932413 - 14932445
Alignment:
Q  21 gtcagtagataaactcaaataagtcaatccaaa 53  Q
    |||||||||||| ||||||||||||||||||||    
T  14932413 gtcagtagataagctcaaataagtcaatccaaa 14932445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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