View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_4 (Length: 534)
Name: NF11650_low_4
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Complemental strand, 16845633 - 16845126
Alignment:
| Q |
7 |
aaagttaagacacgatggatggtgcttaatttttgtttttataatcacaaacttgattataaaaataataattagcaatagttatacgtagatttatgag |
106 |
Q |
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| T |
16845633 |
aaagttaagacacgatggatggtgcttaatttttgtttttatagtcacaaacttgattataaaaataataattagcaacagttatacgtagatttatgag |
16845534 |
T |
|
| Q |
107 |
gtttaagaagagtcgatagattggagataaactatgtgggttaaatgaaagctcagtataattaaaaagagacaataaaaggttaggtgagtttgtgttt |
206 |
Q |
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| T |
16845533 |
gtataacaagggtcaatagattggagataaactatgtgggttaaatgaaagctcaatataattaaaaagagacaa-aaaaggttaggtgagtttgtgttt |
16845435 |
T |
|
| Q |
207 |
ggtgatcaaagtcagaaagagagttaaaacttaaactgacatgagtgtaaatatttattgaatcagtgaattgatgaatgtaataaatgagtactgcata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16845434 |
ggtgatcaaagtcagaaagagagttaaaacttaaactgacatgaatgtaaatatttattgaatcagtgaattgatgaatgtaatagatgagtactgcata |
16845335 |
T |
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| Q |
307 |
tgccgtatatatactacagtaaagtaattattgattgaaagtgaaggtgggagttatgattttctgagtgagtgaatgtgtgtggggctgtgaattgtga |
406 |
Q |
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| T |
16845334 |
tgccgtatatatactacagtaaagtaattattgattgaaagtgaaggtgggagttatgattttctgagtgagtgaatgtgtgtggggctgtgaattgtga |
16845235 |
T |
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| Q |
407 |
gggtggtgggggtggaaatatactgacttgttagaggagcatgcagtggttaacgtgctgctgcttctgcatgttaatgaggtcaacgttacaggtctta |
506 |
Q |
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||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16845234 |
gggtggtgggggtggaaatgtactgactag-tagaggagcatgcagtggttaacgtgctgctgcttctgcatgttaatgaggtcaacgttacaggtctta |
16845136 |
T |
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| Q |
507 |
cagtctagct |
516 |
Q |
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|||||||||| |
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| T |
16845135 |
cagtctagct |
16845126 |
T |
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