View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_6 (Length: 494)
Name: NF11650_low_6
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 45546027 - 45546494
Alignment:
| Q |
20 |
ctgtgtagcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacacacgccaccgggacataatattacgttcaannnnnnnctatttctc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |
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| T |
45546027 |
ctgtgtagcaccggaactttatattgaagatgtgtcaggtgtgtaacacagacacacgccaccgggacatattattacgttcaatttttttccatttctc |
45546126 |
T |
|
| Q |
120 |
aaattattaccggtgtctagtcctatatcagtttctagtctgatgtctatgtcaatgatttatagtctaaaaccaagtgccagattctacttcacaagag |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546127 |
aaattattaccggtgtctagtcctatatcagtgtctagtctgatgtctatgtcaatgatttatagtctaaaaccaagtgccagattctacttcacaagag |
45546226 |
T |
|
| Q |
220 |
aatatgggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgannnnnnnggtct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45546227 |
aatatgggatgtactagtagtcccttgaattctatcataatctaattgcataaagaatgtagaaaagaacatacttggtacttcacgatttttttggtct |
45546326 |
T |
|
| Q |
320 |
tgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45546327 |
tgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccat |
45546426 |
T |
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| Q |
420 |
gcttcttaatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcttctca |
487 |
Q |
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| T |
45546427 |
gcttcttaatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcttctca |
45546494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 486
Target Start/End: Original strand, 45551458 - 45551732
Alignment:
| Q |
207 |
tacttcacaagagaatatgggatgtactagtagtcccttgaattctatcgtaatctaattgcataaagaatgtagaaaagaacatacttggtacttcacg |
306 |
Q |
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|||||||||||| || |||| ||| | |||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||| ||| | | |
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| T |
45551458 |
tacttcacaagaaaacatggaatgcgccggtagtcccttgaattctagcataatctaattgca--aataatgtagaaaagaacatacttggtgcttgatg |
45551555 |
T |
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| Q |
307 |
annnnnnnggtcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaat |
406 |
Q |
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| T |
45551556 |
atcttgtgggtcttgaaccagttgcttatcctcatccaagtcgatatcatcat---gagtatgctgaatttcattgttatgtccattaccatgatcaagt |
45551652 |
T |
|
| Q |
407 |
acattctgaccatgcttcttaatactgtccctaactttcctagcctttgccttcaccctactcataacagacttcttctc |
486 |
Q |
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|| | ||||| || || ||||| ||||| ||| |||| ||||||||||||||||| || ||| |||||| |||||||| |
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| T |
45551653 |
acttgttgaccgtgttttttaattgtgtccttaattttcttagcctttgccttcaccttattcagaacagatttcttctc |
45551732 |
T |
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