View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11650_low_7 (Length: 479)
Name: NF11650_low_7
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11650_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 120 - 453
Target Start/End: Complemental strand, 7377456 - 7377108
Alignment:
| Q |
120 |
caatggtgatgagcatgaataactttgagagcttcgaatatgctgaaacaaatagtaaagcnnnnnnnn--------tgcgagatttacctaggcatgac |
211 |
Q |
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| T |
7377456 |
caatggtgatgagcatgaataactttaagagcttcaaatatg-tgaaacaaatagtaaagcaaaaaaaaaaaaaaaatgcgagatttacctaggcatgac |
7377358 |
T |
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| Q |
212 |
acaacatagaaacatttttattgatgaaagatgttttgtatagttgcataactgatttaacaacttttgcatgagaatgaccaagtctattatgcctctt |
311 |
Q |
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| T |
7377357 |
ataacatagacacatttttattgatgaaagatgttttgtatagttgcataactgatttaacaacttttgcatgagaatgaccaagtctattatgcctctt |
7377258 |
T |
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| Q |
312 |
ataaattatggttgggctc--------acattatcatttgaaaggacacacattaaacagaaaaattgctagtttagttagtttgttattcttaacaaac |
403 |
Q |
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| T |
7377257 |
agaaattatagttgggctcacatagtcacattatcatttgaaaggacacacattaaacagaaaaattgctagtttagttagtttgttattcttaacaaac |
7377158 |
T |
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| Q |
404 |
taactgtaattaatttattgagactgatcctatactctaataattaaaaa |
453 |
Q |
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| T |
7377157 |
taactgtaattaatttattgagactgatcctatactctaataattaaaaa |
7377108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7377663 - 7377554
Alignment:
| Q |
1 |
aaaggttagtaaaatgacaaagttcacctcccaaatcactttgaacatctttaatattgattaaaaatttagtgtgaatgaacttaaaaatttgttggag |
100 |
Q |
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| T |
7377663 |
aaaggttagtaaaatgacaaagttcacctcccaaatcactttgaacatctttaatattgattaaaaatttagtgtgaatgaacttaaaaatttgttggag |
7377564 |
T |
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| Q |
101 |
tgcttgaaag |
110 |
Q |
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| T |
7377563 |
tgcttgaaag |
7377554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 7368197 - 7368117
Alignment:
| Q |
365 |
aaaattgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata |
445 |
Q |
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| T |
7368197 |
aaaattgttagtttagttggtttgttattcttaacgagcaacctataactaacttattgagagtgattatatactctaata |
7368117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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