View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11650_low_9 (Length: 440)

Name: NF11650_low_9
Description: NF11650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11650_low_9
NF11650_low_9
[»] chr6 (1 HSPs)
chr6 (11-440)||(4191635-4192064)
[»] chr1 (1 HSPs)
chr1 (11-440)||(52211194-52211623)
[»] chr4 (2 HSPs)
chr4 (299-440)||(47715973-47716114)
chr4 (299-440)||(47857969-47858110)


Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 4192064 - 4191635
Alignment:
Q  11 cagagagcagcagtacaatgaatatgcgaataagcatgctgtctaaaattaagaaagttttgtttcagagccttggtcatgttttgaaatatagaacaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4192064 cagagagcagcagtacaatgaatatgcgaataagcatgctgtctaaaattaagaaagttttgtttcagagccttagtcatgttttgaaatatagaacaat 4191965  T
Q  111 cccttctggagctctaataaaaacaagtttagttaaaattcaaatattaacactctggccaatgacgagttataatctcagaagctaatgcaatatcaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4191964 cccttctggagctctaataaaaacaagtttagttaaaattcaaatattaacactctggccaaggacgagttataatctcagaagctaatgcaatatcaga 4191865  T
Q  211 tgcgaagagaaaataccagaaatcacaacggaaagtcacagttagaatgcctaactcaaatattnnnnnnncatagagaaacattgagtagaaacatacc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  4191864 tgcgaagagaaaataccagaaatcacaacggaaagtcacagttagaatgcctaactcaaatattaaaaaaacatagagaaacattgagtagaaacatacc 4191765  T
Q  311 tcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtcttt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4191764 tcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtcttt 4191665  T
Q  411 ttcccaaatcataaaacctgagaacaggtc 440  Q
    ||||||||||||||||||||||||||||||    
T  4191664 ttcccaaatcataaaacctgagaacaggtc 4191635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 52211623 - 52211194
Alignment:
Q  11 cagagagcagcagtacaatgaatatgcgaataagcatgctgtctaaaattaagaaagttttgtttcagagccttggtcatgttttgaaatatagaacaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52211623 cagagagcagcagtacaatgaatatgcgaataagcatgctgtctaaaattaagaaagttttgtttcagagccttagtcatgttttgaaatatagaacaat 52211524  T
Q  111 cccttctggagctctaataaaaacaagtttagttaaaattcaaatattaacactctggccaatgacgagttataatctcagaagctaatgcaatatcaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  52211523 cccttctggagctctaataaaaacaagtttagttaaaattcaaatattaacactctggccaaagacgagttataatatcagaagctaatgcaatatcaga 52211424  T
Q  211 tgcgaagagaaaataccagaaatcacaacggaaagtcacagttagaatgcctaactcaaatattnnnnnnncatagagaaacattgagtagaaacatacc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||    
T  52211423 tgcgaagagaaaataccagaaatcacaacggaaagtcacagttagaatgcctaactcaaatattaaaaaaacatagacaaacattgagtagaaacatacc 52211324  T
Q  311 tcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttccttaataaccgtcttt 410  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52211323 tcttgaatgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcacacttccttaataaccgtcttt 52211224  T
Q  411 ttcccaaatcataaaacctgagaacaggtc 440  Q
    ||||||||||||||||||||||||||||||    
T  52211223 ttcccaaatcataaaacctgagaacaggtc 52211194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 47715973 - 47716114
Alignment:
Q  299 tagaaacatacctcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttcctta 398  Q
    |||||||||||||||||  || | || ||||||||||||||||||||||  |||||||||||||| | | ||||||||  |||||||||| | || ||||    
T  47715973 tagaaacatacctcttggatgccacctacataaattcgatcacggtaggcatgaatagagacaatggagctggggaatgacttattctcacattttctta 47716072  T
Q  399 ataaccgtctttttcccaaatcataaaacctgagaacaggtc 440  Q
    |||| |||||||||||||||||||| | |||||| |||||||    
T  47716073 ataatcgtctttttcccaaatcatatagcctgagtacaggtc 47716114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 440
Target Start/End: Complemental strand, 47858110 - 47857969
Alignment:
Q  299 tagaaacatacctcttgagtgtccccaacataaattcgatcacggtaggtttgaatagagacaattgtgttggggaatagcttattctcatacttcctta 398  Q
    |||||||||||||||||  |||| || ||||||||||||||||||||||  |||||||||||||| |   |||| |||  |||||||||| | || ||||    
T  47858110 tagaaacatacctcttggatgtcacctacataaattcgatcacggtaggcatgaatagagacaatcgaaatgggaaatgacttattctcacattttctta 47858011  T
Q  399 ataaccgtctttttcccaaatcataaaacctgagaacaggtc 440  Q
    |||| |||||||||||||||||||| | |||||| |||||||    
T  47858010 ataatcgtctttttcccaaatcatatagcctgagcacaggtc 47857969  T

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