View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_10 (Length: 647)
Name: NF11651_high_10
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_10 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 6565 - 6861
Alignment:
| Q |
3 |
acatgggtatgaaattaaggaggttgaaaaaggcgaacaattcttgggtgtgggatgaacacgggaatatggaggatagagtaaaagttcttgtggatca |
102 |
Q |
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| T |
6565 |
acatgggtatgaaattaaggaagttgaaaaaggagaacaattcttgggtgtgggatgaacacgggaatatggaggatagagtaaaagttcttgtggatca |
6664 |
T |
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| Q |
103 |
aattgctataatagattagttaagtgtaagtagggtttttagtggtcattttgaagaagtggagacgacccgagctagatggagctgctttcccttcttt |
202 |
Q |
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| T |
6665 |
aattgctataatagattagttaagtgtaagtagggtttttagtggtcattttgaagaagtggagacgactcgagctagatggagctgctttcccttcttt |
6764 |
T |
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| Q |
203 |
atcggaagaaaagaatgtcatcatatcaagactatttatggaagaggagatcaaagaagtggtgctctaggcatatgacaacaaaagtctatgttcaatt |
302 |
Q |
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| T |
6765 |
atcggaagaaaagaatgtcatcatatcaagac----tatggaagaggagatcaaagaagtggtgctctaggcgtatgacaacaaaagtctatgttcaatt |
6860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 420 - 630
Target Start/End: Original strand, 6879 - 7087
Alignment:
| Q |
420 |
ttattaccctaatcccgtggtaaatatgccacactcattacacgatttttgcccaattgttttgttgagaagtctatatgatgttttggcaaaggttctt |
519 |
Q |
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| T |
6879 |
ttattaccctaatcccgtggtaaatatgccacactcattacacgattttcgcccaattgttttgttgggaagtctat--gatgttttggcaaaggtgctt |
6976 |
T |
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| Q |
520 |
actaaaaggatgaaagtggtaattgattcaattatatccaagaatcaatcgtaattcttaatagaaaaagttataatagatggggtgttgatggtggata |
619 |
Q |
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| T |
6977 |
actaaaaggatgaaagtggtaattgattcaattatatccaagaatcaatcttaattcttaatagaaaaacttataatagatggggtgttgatggtggatg |
7076 |
T |
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| Q |
620 |
aagttgttgat |
630 |
Q |
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| T |
7077 |
aagttgttgat |
7087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 303
Target Start/End: Complemental strand, 23385903 - 23385607
Alignment:
| Q |
3 |
acatgggtatgaaattaaggaggttgaaaaaggcgaacaattcttgggtgtgggatgaacacgggaatatggaggatagagtaaaagttcttgtggatca |
102 |
Q |
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| T |
23385903 |
acatgggtatgaaattaaggaagttgaaaaaggagaacaattcttgggtgtgggatgaacacgggaatatggaggatagagtaaaagttcttgtggatca |
23385804 |
T |
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| Q |
103 |
aattgctataatagattagttaagtgtaagtagggtttttagtggtcattttgaagaagtggagacgacccgagctagatggagctgctttcccttcttt |
202 |
Q |
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| T |
23385803 |
aattgctataatagattagttaagtgtaagtagggtttttagtggtcattttgaagaagtggagacgactcgagctagatggagctgctttcccttcttt |
23385704 |
T |
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| Q |
203 |
atcggaagaaaagaatgtcatcatatcaagactatttatggaagaggagatcaaagaagtggtgctctaggcatatgacaacaaaagtctatgttcaatt |
302 |
Q |
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| T |
23385703 |
atcggaagaaaagaatgtcatcatatcaagac----tatggaagaggagatcaaagaagtggtgctctaggcgtatgacaacaaaagtctatgttcaatt |
23385608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 420 - 630
Target Start/End: Complemental strand, 23385589 - 23385381
Alignment:
| Q |
420 |
ttattaccctaatcccgtggtaaatatgccacactcattacacgatttttgcccaattgttttgttgagaagtctatatgatgttttggcaaaggttctt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
23385589 |
ttattaccctaatcccgtggtaaatatgccacactcattacacgattttcgcccaattgttttgttgggaagtctat--gatgttttggcaaaggtgctt |
23385492 |
T |
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| Q |
520 |
actaaaaggatgaaagtggtaattgattcaattatatccaagaatcaatcgtaattcttaatagaaaaagttataatagatggggtgttgatggtggata |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23385491 |
actaaaaggatgaaagtggtaattgattcaattatatccaagaatcaatcttaattcttaatagaaaaacttataatagatggggtgttgatggtggatg |
23385392 |
T |
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| Q |
620 |
aagttgttgat |
630 |
Q |
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| T |
23385391 |
aagttgttgat |
23385381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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