View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_103 (Length: 204)
Name: NF11651_high_103
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 51361735 - 51361642
Alignment:
| Q |
92 |
aaacattgttcaaaaaatattctgcatgaccattattttagctatctatacaaacaccttggttggttgtgttttcttagaattttgatttctt |
185 |
Q |
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| T |
51361735 |
aaacattgttcaaaaaatattctgcatgaccattattttagctatctatacaaacaccttggttggttgtgttttctttgaattttgatttctt |
51361642 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 51361874 - 51361784
Alignment:
| Q |
2 |
accctcagccatggtaactatctgctcatctcgtgcaccataatatagagagtgttcatgttaacatgtttaatgtgttttcccctacttaaa |
94 |
Q |
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| T |
51361874 |
accctcagccatggtaactatctgctcatctcgtgcaccataatat--agagtgttcatgttaacatgtttaatatgttttcccctacttaaa |
51361784 |
T |
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