View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_high_13 (Length: 604)

Name: NF11651_high_13
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_high_13
NF11651_high_13
[»] chr4 (1 HSPs)
chr4 (18-592)||(51988902-51989476)
[»] chr6 (4 HSPs)
chr6 (392-580)||(19855863-19856039)
chr6 (535-584)||(18662846-18662895)
chr6 (441-489)||(18662891-18662938)
chr6 (441-489)||(18669354-18669401)
[»] chr8 (5 HSPs)
chr8 (508-583)||(13145660-13145735)
chr8 (508-580)||(13146728-13146800)
chr8 (514-583)||(26378969-26379038)
chr8 (514-578)||(41490863-41490927)
chr8 (508-579)||(26380027-26380098)
[»] chr3 (8 HSPs)
chr3 (508-580)||(5751088-5751160)
chr3 (508-580)||(5788047-5788119)
chr3 (524-580)||(5692044-5692100)
chr3 (509-580)||(5743406-5743477)
chr3 (509-580)||(5780365-5780436)
chr3 (522-580)||(5791577-5791635)
chr3 (508-580)||(5668296-5668368)
chr3 (508-580)||(5677790-5677862)
[»] chr7 (1 HSPs)
chr7 (531-568)||(7113227-7113264)
[»] chr1 (1 HSPs)
chr1 (524-579)||(9979309-9979364)


Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 51989476 - 51988902
Alignment:
Q  18 gttaaaagggaatggatgatggtttgcttcatatcacatctatatatgaggaataggcaggaagttgatctctatcatggtcaccattgtggcccatgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51989476 gttaaaagggaatggatgatggtttgcttcatatcacatctatatatgaggaataggcaggaagttgatctctatcatggttaccattgtggcccatgat 51989377  T
Q  118 cttagaagtcgtcaacttctacccactctaacctttccttggtcgatgtttgtgaggccaagtaggaaggtacgtctagtagtgctggcacgatctagtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  51989376 cttagaagtcgtcaacttctacccactctaacctttccttggtcgatgtttatgaggccaagtatgaaggtacgtctagtagtgctggcacgatctagtc 51989277  T
Q  218 acctctaggaaacgtgcacatgctagtagttgtttgccagctcggtgttgggcatggatatttcaacattggaggtgtcgtgattatctaggagcaggat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51989276 acctctaggaaacgtgcacatgctagtagttgtttgccagctcggtgttgggcatggatatttcaacattggaggtgtcgtgattatctaggagctggat 51989177  T
Q  318 agatgtataaagaatatgacagtctacatcccaaatactataaagttatagcaataccattccatacagtgtctaccatcaaaagcacgtgtctgcctct 417  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51989176 ggatgtataaagaatatgacagtctacatcccaaatactataaaattatagcaataccattccatacagtgtctaccatcaaaagcgcgtgtctgcctct 51989077  T
Q  418 cttttggcttgacaacagatagaattgacataaccaatgtccttttgagtttttaatcaaagaaattacactagtttnnnnnnnnnnnnngatataactt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||    
T  51989076 cttttggcttgacaacagatagaattgacataaccaatgtccttttgagtttttaatcaaagaaattacactagtttaaaaaataaaaaagatataactt 51988977  T
Q  518 gtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtgatgtccatc 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  51988976 gtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtgttgtgcatc 51988902  T

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Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 392 - 580
Target Start/End: Original strand, 19855863 - 19856039
Alignment:
Q  392 accatcaaaagcacgtgtctgcctctcttttggcttgacaacagatagaattgacataaccaatgtccttttgagtttttaatcaaagaaattacactag 491  Q
    ||||||| |||| | | |||||||||| |||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |    
T  19855863 accatcagaagcgcatatctgcctctcatttgacttgacaacggatataattgacataaccgatgtccttttgagtttttaatcaaagaaatcacactcg 19855962  T
Q  492 tttnnnnnnnnnnnnngatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    ||              ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  19855963 tt------------gggatataacttgtaattgaccaaataaaacacatggtatacgatgatgacgaagaaataaagaacatcttcaac 19856039  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 18662895 - 18662846
Alignment:
Q  535 acacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtga 584  Q
    |||| ||||| |||||||||||||  ||||||||||||||||||||||||    
T  18662895 acacttggtatacgatgatgacgataaaataaaaagcatcttcaacgtga 18662846  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 18662938 - 18662891
Alignment:
Q  441 attgacataaccaatgtccttttgagtttttaatcaaagaaattacact 489  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  18662938 attgacataaccagtgtccatt-gagtttttaatcaaagaaattacact 18662891  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 18669401 - 18669354
Alignment:
Q  441 attgacataaccaatgtccttttgagtttttaatcaaagaaattacact 489  Q
    ||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  18669401 attgacataaccagtatccttg-gagtttttaatcaaagaaattacact 18669354  T

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Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 508 - 583
Target Start/End: Original strand, 13145660 - 13145735
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtg 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13145660 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaatcatcttcaacgtg 13145735  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 13146800 - 13146728
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13146800 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaatcatcttcaac 13146728  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 514 - 583
Target Start/End: Original strand, 26378969 - 26379038
Alignment:
Q  514 acttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaacgtg 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26378969 acttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaatcatcttcaacgtg 26379038  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 41490863 - 41490927
Alignment:
Q  514 acttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttca 578  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  41490863 acttgtaattgaccaaataaaacacatggtagatgatgatgatgaagaaataaaaagcatcttca 41490927  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 508 - 579
Target Start/End: Complemental strand, 26380098 - 26380027
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaa 579  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||| |||||||||    
T  26380098 gatataacttgtaattgaccaaataaaacacattatttacgatgatgacgaagaaataaaaatcatcttcaa 26380027  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 5751160 - 5751088
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    |||||||||||| |  ||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  5751160 gatataacttgtgacagaccaaatagaacacatagtagctgatgatgacgaagaaataaaaagaatcttcaac 5751088  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 5788119 - 5788047
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    |||||||||||| |  ||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  5788119 gatataacttgtgacagaccaaatagaacacatagtagctgatgatgacgaagaaataaaaagaatcttcaac 5788047  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 5692100 - 5692044
Alignment:
Q  524 gaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    ||||||||| |||| |||||||  ||||||||||||||||||||||| |||||||||    
T  5692100 gaccaaatagaacatatggtagctgatgatgacgaagaaataaaaagaatcttcaac 5692044  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 580
Target Start/End: Complemental strand, 5743477 - 5743406
Alignment:
Q  509 atataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    ||||||||||| |  ||||||||| |||| |||||||  ||||||||||||||||||| ||| |||||||||    
T  5743477 atataacttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataagaagaatcttcaac 5743406  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 580
Target Start/End: Complemental strand, 5780436 - 5780365
Alignment:
Q  509 atataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    ||||||||||| |  ||||||||| |||| |||||||  ||||||||||||||||||| ||| |||||||||    
T  5780436 atataacttgtgaaagaccaaatagaacatatggtagctgatgatgacgaagaaataagaagaatcttcaac 5780365  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 522 - 580
Target Start/End: Complemental strand, 5791635 - 5791577
Alignment:
Q  522 ttgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    ||||||||||| |||| | |||||  ||||||||||||||||||||||| |||||||||    
T  5791635 ttgaccaaatagaacatacggtagctgatgatgacgaagaaataaaaagaatcttcaac 5791577  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 5668368 - 5668296
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    |||||||||||| |  ||||||||| |||| |||||||  ||||||| ||  ||||||||||| |||||||||    
T  5668368 gatataacttgtgaaagaccaaatagaacatatggtagctgatgatgtcgtggaaataaaaagaatcttcaac 5668296  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 580
Target Start/End: Complemental strand, 5677862 - 5677790
Alignment:
Q  508 gatataacttgtaattgaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaac 580  Q
    |||||||||||| |  ||||||||| |||| |||||||  ||||||| || |||||| ||||| |||||||||    
T  5677862 gatataacttgtgaaagaccaaatagaacatatggtagctgatgatgtcgtagaaatgaaaagaatcttcaac 5677790  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 568
Target Start/End: Original strand, 7113227 - 7113264
Alignment:
Q  531 taaaacacatggtagacgatgatgacgaagaaataaaa 568  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  7113227 taaaatacatggtagacgatgatgacgaagaaataaaa 7113264  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 9979364 - 9979309
Alignment:
Q  524 gaccaaataaaacacatggtagacgatgatgacgaagaaataaaaagcatcttcaa 579  Q
    ||||| ||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  9979364 gaccacataaaacacatggtagatgcagatgacgaagaaataaacatcatcttcaa 9979309  T

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