View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_high_14 (Length: 584)

Name: NF11651_high_14
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_high_14
NF11651_high_14
[»] chr1 (4 HSPs)
chr1 (1-569)||(52766832-52767400)
chr1 (1-176)||(52771180-52771355)
chr1 (256-480)||(52770885-52771109)
chr1 (527-566)||(46135632-46135671)
[»] chr7 (2 HSPs)
chr7 (4-158)||(392460-392614)
chr7 (251-413)||(392695-392857)
[»] chr3 (1 HSPs)
chr3 (7-140)||(38011183-38011316)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 52767400 - 52766832
Alignment:
Q  1 acagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52767400 acagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctg 52767301  T
Q  101 ccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctatatagcttaggaggagtaatagcttcgctaataatcttatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52767300 ccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagtaatagcttcgctaataatcttatc 52767201  T
Q  201 agtctcattttttaaccaatcatctagaactactacaaatcaaaatgatttgtatggatggcttgcagttgttggtttggccctatatattgcatttttc 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52767200 agtctcattttttaaccaatcatctagcactactacaaatcaaaatgatttgtatggatggcttgcggttgttggtttggccctatatattgcatttttc 52767101  T
Q  301 tcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcaggagtaccgaggaatgtgtggaggcatgtcagctactgtgaattgga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52767100 tcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcaggagtaccgaggaatgtgtggagggatgtcagctactgtgaattgga 52767001  T
Q  401 tttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggactggtcctacattcttgcttcttgctattatagctgttatagcgtt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52767000 tttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggactggtcctacattcttgcttcttgctattatagctgttatagcgtt 52766901  T
Q  501 tttgtttgtggtctttttggttccagaaaccaaagggttgacattcgatgaagtggagttgttgtggag 569  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52766900 tttgtttgtggtttttttggttccagaaaccaaagggttgacatttgatgaagtggagttgttgtggag 52766832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 52771355 - 52771180
Alignment:
Q  1 acagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctg 100  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||| | |||||||   |||||||||    
T  52771355 acagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatgctg 52771256  T
Q  101 ccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctatatagcttaggaggagt 176  Q
     |||||| ||||||||||||||||| ||||| ||||||||  |||| | |||||| || | |||||||||||||||    
T  52771255 tcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt 52771180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 256 - 480
Target Start/End: Complemental strand, 52771109 - 52770885
Alignment:
Q  256 ggatggcttgcagttgttggtttggccctatatattgcatttttctcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcagg 355  Q
    ||||||||||||||| | ||||||   || ||||| || |||||||| || |||||||| || |||||||||||| | ||||| ||  |||||||  | |    
T  52771109 ggatggcttgcagttttgggtttgatactgtatatagcttttttctcccctgggatgggaccagtgccgtgggcaatgaactcagagatatatcctaaag 52771010  T
Q  356 agtaccgaggaatgtgtggaggcatgtcagctactgtgaattggatttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggac 455  Q
    | ||  ||||||| ||||| || |||||||||||||||  |||| |||| ||| | |||||| ||||| ||||||||||  |||| ||||||  ||||||    
T  52771009 aatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcattgtgtctcagacatttctttctgttgctgaagctttagggac 52770910  T
Q  456 tggtcctacattcttgcttcttgct 480  Q
    ||||||||| |||||| ||||||||    
T  52770909 tggtcctactttcttgattcttgct 52770885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 46135671 - 46135632
Alignment:
Q  527 aaaccaaagggttgacattcgatgaagtggagttgttgtg 566  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  46135671 aaacctaagggttgacatttgatgaagtggagttgttgtg 46135632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 392460 - 392614
Alignment:
Q  4 gtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctgccg 103  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||  | ||| ||||||||||||  || || ||||||||||||||| |||| |||| ||    
T  392460 gtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatagttgctggcatgaacgctgtcg 392559  T
Q  104 gaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccct 158  Q
    ||||| ||||||| ||||||||||||||| |  |||| |||||||||||||||||    
T  392560 gaacaattcttggcatttaccttattgacaacacagggcggaaaaaattagccct 392614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 392695 - 392857
Alignment:
Q  251 tgtatggatggcttgcagttgttggtttggccctatatattgcatttttctcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatcc 350  Q
    |||||||||||||||||||| | ||  | | ||| |||||||  || ||||||||||| |||||||| || || ||| |  ||||||| ||  |||||||    
T  392695 tgtatggatggcttgcagttatcgggctaggcctttatattggtttcttctcgccaggaatggggccagttccatggactataaactcagagatatatcc 392794  T
Q  351 gcaggagtaccgaggaatgtgtggaggcatgtcagctactgtgaattggatttcaaatttgat 413  Q
      | || || ||||| || ||||| |||||| |||| || |||  ||||||||||||||||||    
T  392795 tgaagaatatcgaggtatatgtgggggcatggcagcgaccgtgtgttggatttcaaatttgat 392857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 38011316 - 38011183
Alignment:
Q  7 atgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctgccggaa 106  Q
    ||||||||||| || |||||  | ||||||||||| ||| | || ||| |||| |||||||  || |||||||| ||||||||| |||| ||||| ||||    
T  38011316 atgtactacagccccacaatcattcaaatggctgggtttaattccaatcagttagctcttcttctatctctcatcgttgctggcatgaacgctgctggaa 38011217  T
Q  107 cagttcttggtatttaccttattgaccatgcagg 140  Q
    |||||||||| ||||| || ||||||||||||||    
T  38011216 cagttcttggcatttatctaattgaccatgcagg 38011183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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