View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_high_17 (Length: 575)
Name: NF11651_high_17
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Complemental strand, 17108977 - 17108438
Alignment:
| Q |
20 |
tttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108977 |
tttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatc |
17108878 |
T |
|
| Q |
120 |
tccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactcta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108877 |
tccactatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactcta |
17108778 |
T |
|
| Q |
220 |
gcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108777 |
gcgataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggttt |
17108678 |
T |
|
| Q |
320 |
aagtttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttcaaaagatgagatttacttttcatatctgcc |
419 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108677 |
aaggttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttcaaaagatgagatttacttttcatatctgcc |
17108578 |
T |
|
| Q |
420 |
agagctgcatctgatggattagtaatattctgtagctcgaaaatggacagatctccatgtagattgagatctcctaactgtttcacattggactcactgc |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108577 |
agagctgcatctgatggattagtaatattctgtagctcgaaaatggacagatctccatgtagagtgagatctcctaactgtttcacattggactcactgc |
17108478 |
T |
|
| Q |
520 |
ccttgtccacataaaaggaactaagaacttgaagattttg |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108477 |
ccttgtccacataaaaggaactaagaacttgaagattttg |
17108438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 16977645 - 16977278
Alignment:
| Q |
23 |
ccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatctcc |
122 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| ||||||||||||||||| | | |||| || |
|
|
| T |
16977645 |
ccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatccctataaaactccataccaatcacc |
16977546 |
T |
|
| Q |
123 |
actatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctagcg |
222 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| |||||||||||| |||||| |||||||||| ||||| | || ||||||||| |||| | | |
|
|
| T |
16977545 |
actattccagagagtccggtaatccgaaggtgcttgagtgatgacataactccaagtgaaggaagcaaaatacagttttcacaattgcttaacttcaagg |
16977446 |
T |
|
| Q |
223 |
ataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggtttaag |
322 |
Q |
| |
|
||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| |||||||||||| |||||||||| |||||||| || |
|
|
| T |
16977445 |
ataccagacatgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttctcaattgagagctcattcaaatgtatagaaggttttag |
16977346 |
T |
|
| Q |
323 |
tttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttca |
390 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | |||||||| |
|
|
| T |
16977345 |
gttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctagtttca |
16977278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 17029517 - 17029150
Alignment:
| Q |
23 |
ccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatctcc |
122 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| ||||||||||||||||| | | |||| || |
|
|
| T |
17029517 |
ccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatccctataaaactccataccaatcacc |
17029418 |
T |
|
| Q |
123 |
actatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctagcg |
222 |
Q |
| |
|
||||| |||||||| | || |||||||||||||| |||||||||||| |||||| |||||||||| ||||| | || ||||||||| |||| | | |
|
|
| T |
17029417 |
actattccagagagtcnggtaatccgaaggtgcttgagtgatgacataactccaagtgaaggaagcaaaatacagttttcacaattgcttaacttcaagg |
17029318 |
T |
|
| Q |
223 |
ataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggtttaag |
322 |
Q |
| |
|
||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| |||||||||||| |||||||||| |||||||| || |
|
|
| T |
17029317 |
ataccagacatgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttctcaattgagagctcattcaaatgtatagaaggttttag |
17029218 |
T |
|
| Q |
323 |
tttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttca |
390 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | |||||||| |
|
|
| T |
17029217 |
gttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctagtttca |
17029150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 17047855 - 17047488
Alignment:
| Q |
23 |
ccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctataaaactccgtcctaatctcc |
122 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| || ||||| ||| ||||||| ||||||||| | | |||| || |
|
|
| T |
17047855 |
ccatccattcatatccttaaaagttaaggtttccaaggatggaaatggaatagatacagtagagcttctcccatccctgtaaaactccataccaatcacc |
17047756 |
T |
|
| Q |
123 |
actatcccagagagcccagtgatccgaaggtgcttaagtgatgacatagttccaagcgaaggaagcatcatacaatgtttacaattgctcaactctagcg |
222 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| |||||||||||| |||||| |||||||||| ||||| | || ||||||||| |||| | | |
|
|
| T |
17047755 |
actattccagagagtccggtaatccgaaggtgcttgagtgatgacataactccaagtgaaggaagcaaaatacagttttcacaattgcttaacttcaagg |
17047656 |
T |
|
| Q |
223 |
ataccagacttatcaatgagttgtctccaaaccaacttggaaaaaatgttccaccgtacttttcaattgagagcgttgtcaaatgtatggaaggtttaag |
322 |
Q |
| |
|
||||||||| | || ||| ||||||||||||||| ||| || || || |||| ||||| |||||||||||| |||||||||| |||||||| || |
|
|
| T |
17047655 |
ataccagacgtgacagtgaattgtctccaaaccaatgtgggaataacgtaccacaatacttctcaattgagagctcattcaaatgtatagaaggttttag |
17047556 |
T |
|
| Q |
323 |
tttctcgagcacctccctttcattttttgaactggtactagtagcgttccaccttaaatttagtttca |
390 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||| | | ||| || ||||| ||||| | |||||||| |
|
|
| T |
17047555 |
gttctggagcacctccctttctttttgtgaactgttgcgagttgcattccatcttaattctagtttca |
17047488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 14298007 - 14297979
Alignment:
| Q |
47 |
taaagtttccaaggatggaaatggaacag |
75 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14298007 |
taaagtttccaaggatggaaatggaacag |
14297979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 555
Target Start/End: Complemental strand, 14312666 - 14312586
Alignment:
| Q |
475 |
catgtagattgagatctcctaactgtttcacattggactcactgcccttgtccacataaaaggaactaagaacttgaagat |
555 |
Q |
| |
|
|||| |||||||| ||||||||||||| | ||||| ||| || || |||||||||||||| ||||| | |||||||||| |
|
|
| T |
14312666 |
catgaagattgagttctcctaactgttgaatattggcctcgctacctttgtccacataaaacgaactcaacacttgaagat |
14312586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University