View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_high_2 (Length: 794)

Name: NF11651_high_2
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_high_2
NF11651_high_2
[»] chr4 (4 HSPs)
chr4 (307-595)||(9499308-9499596)
chr4 (20-153)||(9499009-9499142)
chr4 (629-782)||(9499594-9499747)
chr4 (24-60)||(56201184-56201220)
[»] chr8 (3 HSPs)
chr8 (20-147)||(20293145-20293267)
chr8 (20-147)||(21079776-21079898)
chr8 (20-86)||(13955753-13955819)
[»] chr6 (4 HSPs)
chr6 (28-150)||(19058791-19058908)
chr6 (20-75)||(29355339-29355394)
chr6 (25-90)||(7492158-7492223)
chr6 (46-80)||(29355313-29355347)
[»] chr7 (5 HSPs)
chr7 (20-147)||(18846129-18846251)
chr7 (20-86)||(15660354-15660420)
chr7 (20-89)||(36692262-36692331)
chr7 (89-150)||(47790230-47790291)
chr7 (20-54)||(47790300-47790334)
[»] chr2 (2 HSPs)
chr2 (20-85)||(23218993-23219058)
chr2 (26-89)||(44672756-44672821)
[»] chr1 (4 HSPs)
chr1 (20-85)||(20039576-20039641)
chr1 (22-85)||(34624211-34624274)
chr1 (20-96)||(29403621-29403698)
chr1 (52-128)||(11375416-11375487)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 307 - 595
Target Start/End: Original strand, 9499308 - 9499596
Alignment:
Q  307 attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatgatgttttcttataattcagccgcatgctc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499308 attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatgatgttttcttataattcagccgcatgctc 9499407  T
Q  407 ccctactttttagtaaacatatcctgagaaattggattagaccatcacaaaaccattgttttatggtgattttatccccataagaaattgggttaaaagc 506  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499408 ccctactttttagtaaacatatctttagaaattggattagaccatcacaaaaccattgttttatggtgattttatccccataagaaattgggttaaaagc 9499507  T
Q  507 agcaaaatccggtgttggaactgttcagacccaacagactgcaaataattctaagtgaaacagctgtgtttagatttaccgtatttggt 595  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499508 agcaaaatccagcgttggaactgttcagacccaacagactgcaaataattctaagtgaaacagctgtgtttagatttaccgtatttggt 9499596  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 9499009 - 9499142
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499009 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 9499108  T
Q  120 ttcagctcaccgttttccagttacataatacctt 153  Q
    ||||||||||||||||||||||||||||||||||    
T  9499109 ttcagctcaccgttttccagttacataatacctt 9499142  T

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Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 629 - 782
Target Start/End: Original strand, 9499594 - 9499747
Alignment:
Q  629 ggtctctgccacggtagttggttgcaccgattttgggtagctaaatgtagccgctgcccaacacatccaaggagtgatgcgtgaccgttatttcatcagg 728  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||    
T  9499594 ggtctctgccacggtagttggttgcactgattttgggtagctaaatgtagccgctgtccaatgcatccaaggagtggtgcgtgaccgttatttcatcagg 9499693  T
Q  729 catgtaaaatggggaattacttccccacttctgcatgacccacctatgatgtcc 782  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  9499694 catgtaaaatggggaattacttccccatttctgcatgacccacctatggtgtcc 9499747  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 56201184 - 56201220
Alignment:
Q  24 gttctctctggtctaggagcttagctctggtaggagt 60  Q
    |||||||||||||||||||| ||||||||||||||||    
T  56201184 gttctctctggtctaggagcctagctctggtaggagt 56201220  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 20293267 - 20293145
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 119  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| | || ||| |||||||     
T  20293267 agaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtttatcct-----ttcagttttctgttttcataattataagagcc 20293173  T
Q  120 ttcagctcaccgttttccagttacataa 147  Q
    || |||||||| |||||| |||| ||||    
T  20293172 ttgagctcaccattttcctgttaaataa 20293145  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 21079898 - 21079776
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 119  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| | || ||| |||||||     
T  21079898 agaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtttatcct-----ttcagttttctgttttcataattataagagcc 21079804  T
Q  120 ttcagctcaccgttttccagttacataa 147  Q
    || |||||||| |||||| |||| ||||    
T  21079803 ttgagctcaccattttcctgttaaataa 21079776  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 13955819 - 13955753
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13955819 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggttaatcctttca 13955753  T

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Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 19058908 - 19058791
Alignment:
Q  28 tctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagctttcagctc 127  Q
    |||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| ||     ||||||| | ||||||||||||||||| |||||    
T  19058908 tctctggtctaggagcctagctctggtaggagttctcttccctctggtttatcctttcaatt-----ttctgttttcatcattgtaagagctttgagctc 19058814  T
Q  128 accgttttccagttacataatac 150  Q
    ||| ||||||||||| |||||||    
T  19058813 accattttccagttaaataatac 19058791  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 29355394 - 29355339
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggt 75  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  29355394 agaagttctatctggtctaggagcttagctctggtaggagttctctgagctctggt 29355339  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 7492158 - 7492223
Alignment:
Q  25 ttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttc 90  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||||| |||| ||||    
T  7492158 ttctctctggtctacgagcttagctctggtaggtattctctgaattctagtttatcttttcgtttc 7492223  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 29355347 - 29355313
Alignment:
Q  46 agctctggtaggagttctctgaactctggtttatc 80  Q
    |||||||||||||||||||||||||||||||||||    
T  29355347 agctctggtaggagttctctgaactctggtttatc 29355313  T

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Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 18846251 - 18846129
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     || |||||  |||||||| | ||| |||||||||||    
T  18846251 agaagttctctctggtctaggagcttagctctggtaggagttctcagaactctggttta-----tcttttcaactttctgttttcatctttgtaagagct 18846157  T
Q  120 ttcagctcaccgttttccagttacataa 147  Q
    || |||||| |  |||||||||| ||||    
T  18846156 ttgagctcatcactttccagttaaataa 18846129  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 15660354 - 15660420
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15660354 agaagttctttctggtctaggagcttagctctggtaggagttctctgaactctggtttatcttttca 15660420  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 36692262 - 36692331
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcattt 89  Q
    |||||||||||||| ||||||||||||||||||||||||||||   |||||||||||   ||||||||||    
T  36692262 agaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattt 36692331  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 47790291 - 47790230
Alignment:
Q  89 tcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataatac 150  Q
    ||||||||||||| | ||| ||||||||||||| |||||| | ||||||||||| |||||||    
T  47790291 tcagttttctgttttcatctttgtaagagctttgagctcatcattttccagttaaataatac 47790230  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 47790334 - 47790300
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggt 54  Q
    ||||||||||||||||||||||||||| |||||||    
T  47790334 agaagttctctctggtctaggagcttaactctggt 47790300  T

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Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 23219058 - 23218993
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 85  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23219058 agaagttctctctgatctaggagcttagctctggtaggagttctctgaactctggtttatcatttc 23218993  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 44672821 - 44672756
Alignment:
Q  26 tctctctggtctaggagcttagctctgg-taggagttctctgaactctggtttatc-ctttcattt 89  Q
    |||||||||||||||||| ||||||||| |||||||||   ||||||||||||||| |||||||||    
T  44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtttatctctttcattt 44672756  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 20039576 - 20039641
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 85  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  20039576 agaagttctttctggtctaggagcttagctctggtaggagttctctaaactctggtttatcatttc 20039641  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 34624274 - 34624211
Alignment:
Q  22 aagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  34624274 aagttgtctctggtctaggagcttagctctggtaggagttctctgaactatggttaatcatttc 34624211  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 29403698 - 29403621
Alignment:
Q  20 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatccttt-catttcagtttt 96  Q
    |||||||||||||||||| ||||||| |||| ||||| |||||||||||| |||||||||| ||| ||||||||||||    
T  29403698 agaagttctctctggtcttggagcttggctcgggtagaagttctctgaaccctggtttatcatttccatttcagtttt 29403621  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 11375487 - 11375416
Alignment:
Q  52 ggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagctttcagctca 128  Q
    ||||||||||||||||||||||||||||||     || |||||||||||| | ||||| ||||||||||| ||||||    
T  11375487 ggtaggagttctctgaactctggtttatcc-----ttccagttttctgttttcatcatggtaagagctttgagctca 11375416  T

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