View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_high_30 (Length: 404)

Name: NF11651_high_30
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_high_30
NF11651_high_30
[»] chr6 (12 HSPs)
chr6 (1-391)||(8289742-8290132)
chr6 (4-185)||(8257035-8257216)
chr6 (4-185)||(8259343-8259524)
chr6 (305-391)||(8257440-8257526)
chr6 (303-391)||(8259785-8259873)
chr6 (31-212)||(8308829-8309010)
chr6 (304-391)||(8309333-8309420)
chr6 (4-83)||(8324923-8325002)
chr6 (30-128)||(8312208-8312306)
chr6 (306-389)||(8262857-8262940)
chr6 (309-360)||(8325364-8325415)
chr6 (4-82)||(8261931-8262009)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 8289742 - 8290132
Alignment:
Q  1 cccgtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaac 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8289742 cccgtgcacacaatactccccctaatgcgcccctccaccatagcatgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaac 8289841  T
Q  101 ggtctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgagaataacat 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8289842 ggtctagttgggacatgtcgagtttcaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtgtgagaataacat 8289941  T
Q  201 aatttcatttctcttataatatttattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacccttgaaagatataggataggaaata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  8289942 aatttcatttctcttataatatttattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacgcttcaaagatataggataggaaata 8290041  T
Q  301 tttgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8290042 tttgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 8290132  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 8257035 - 8257216
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggt 103  Q
    ||||| || ||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||  |  ||||||||||    
T  8257035 gtgcatacgatactcccccttatgcgaccctccaccattgcacgtgctgcatgtttcacacacaacgccattccttgaacattgaccgcaaataaacggt 8257134  T
Q  104 ctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg 185  Q
    | | |||||||||||| |||||||  |  |||||||| || ||||||  |||||| |||||| |||||||||||||||||||    
T  8257135 caaattgggacatgtcaagttccatgattgtttgatcagtgggactagcgattccagcattgctgaacattatatctacctg 8257216  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 8259343 - 8259524
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggt 103  Q
    ||||||||||| || ||||| | ||  ||||||||||| ||||| || || |||||||||||||||||||| || ||||||||||     ||||||||||    
T  8259343 gtgcacacaatgctccccctcacgctaccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaacattgacgccaaataaacggt 8259442  T
Q  104 ctagttgggacatgtcgagttccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg 185  Q
    | ||||||||||| || |||||||  || |||||||| || ||||||| |||||| |||||| |||||||||||||||||||    
T  8259443 caagttgggacatatcaagttccattactgtttgatctgtgggactaacgattccagcattgctgaacattatatctacctg 8259524  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 8257440 - 8257526
Alignment:
Q  305 aacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||||||||||| ||||  ||||||||||||||||| ||||||||    
T  8257440 aacctgtccataagtatcaaccgttgattgaactaggtttttgacttgatcttcatctgtgacatcgcagtggatgtaagtgcacct 8257526  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 8259785 - 8259873
Alignment:
Q  303 tgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||    
T  8259785 tgaacctgtccataagtatctaccgttgatcgaacgagatttttgacttgatcttcatctgccacatcacaatggatgtaagtgcacct 8259873  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 8308829 - 8309010
Alignment:
Q  31 ccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaaca 130  Q
    ||||| ||||| ||||| || || |||||||||||||| | |||||| || |||||||  |  ||||||||||| ||||||||||| || |||||||  |    
T  8308829 ccctctaccattgcacgcgccgcgtgtttcacacacaacgacattccacggacattgacggcaaataaacggtcaagttgggacatatcaagttccatta 8308928  T
Q  131 cagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgagaataacataatttcatttct 212  Q
      |||||| | || | ||||| |||||| |||||| ||||||| ||||| | ||| | ||||||||||| ||||||||||||    
T  8308929 ttgtttgagctgtggaactaatgattccagcattgctgaacatgatatccagctgttgtgagaataacaaaatttcatttct 8309010  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 8309333 - 8309420
Alignment:
Q  304 gaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacct 391  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||  || || || |||||||||||||||||    
T  8309333 gaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcatctgtcacgtcacaatggatgtaggtgcacct 8309420  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 8324923 - 8325002
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaac 83  Q
    ||||||||||| || ||||| | || ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  8324923 gtgcacacaatgctacccctcacgcacccgtccaccatcgcacgtgccgcatgtttcacgcacaatgccattcctcgaac 8325002  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 8312208 - 8312306
Alignment:
Q  30 cccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaa 128  Q
    |||||||||||| | |||||| ||||||||||| ||||||||||||||||| | ||| |||| ||||||| ||||   ||| || ||||||||||||||    
T  8312208 cccctccaccatcgaacgtgctgcatgtttcacgcacaatgccattcctcggatattaattgagaataaatggtcagcttgagaaatgtcgagttccaa 8312306  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 8262857 - 8262940
Alignment:
Q  306 acctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcac 389  Q
    ||||||||||||| ||| || |||||||||| ||||||||| ||||||||||| | ||||| ||| || || ||||||||||||    
T  8262857 acctgtccataagcattgacagttgattgaacgagatttttaacttgatcttcatttgctatatcacaatgaatgtaggtgcac 8262940  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 8325364 - 8325415
Alignment:
Q  309 tgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgt 360  Q
    |||||||||||||| || |||||||||| |||||||||||||||||||||||    
T  8325364 tgtccataagtattgactgttgattgaacgagatttttgacttgatcttcgt 8325415  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 8261931 - 8262009
Alignment:
Q  4 gtgcacacaatacttcccctaatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaa 82  Q
    ||||||||||| || ||||| | ||||||||||||||| |||||||| || | |||||||||||||| | |||||||||    
T  8261931 gtgcacacaatgctacccctcacgcgcccctccaccatcgcacgtgccgcgtatttcacacacaatgtcgttcctcgaa 8262009  T

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