View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_high_4 (Length: 752)
Name: NF11651_high_4
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 13 - 737
Target Start/End: Original strand, 2343822 - 2344561
Alignment:
| Q |
13 |
atcacttctctcaaattttgtcaattaattctccatacattattgttatgagtttttagtggnnnnnnnnn-ccatgtttattgctagagattctcaaag |
111 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2343822 |
atcacttctctcaaattttgtcatttaattctccatacattattgttatgagtttttagtggttttttttttccatgtttattgctagagattctcaaag |
2343921 |
T |
|
| Q |
112 |
agtagagtagagagcatagctgaaaagggttgtgagagtacttagccgaatatccttggctggcttacgtcttagccgaataccggattaccagggccct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
2343922 |
agtagagtagagagcatagctgaaaagggttgtgagagtacttagccgaatatccttggct----tacgtcttagccaattaccggattaccagggccct |
2344017 |
T |
|
| Q |
212 |
tttcccctggaaatcagagggtaaagacnnnnnnnggcctagtttccttctattattacggacgctgtccataatggcacaagttctgtagcctttagtt |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344018 |
tttcccctggaaatcaaagggtaaagacaaaaaaaggcctagtttccttctattattacggacgctgtccataatggcacaagttctgtagcctttagtt |
2344117 |
T |
|
| Q |
312 |
tcttgaatgcaggataattgttgctgacagcaacttgctgttgtgctcaatgccctaatgttaatattgtaacatgc------------------aattt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2344118 |
tcttgaatgcaggataattgttgctgacagcaacttgctgttgtgctcaatgccctaatgttaatattgtaacatgcggaagtagattaaaatgcaattt |
2344217 |
T |
|
| Q |
394 |
aatagtttttaactatttgtctcgttgtctgcaggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttct |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344218 |
aatagtttttaactatttgtctcgttgtctgcaggggggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttct |
2344317 |
T |
|
| Q |
494 |
catggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgttgcaatcagtttgaaacctattcatattattagatactttt |
593 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2344318 |
catggcttctccaatatttgcgtctctagctaagaggtaattaggatagccattcgtgttgcaatcagtttgaaacctattcatactattagatactttt |
2344417 |
T |
|
| Q |
594 |
gttactttaaacattaaatgtcataagaatcctttctcacaattcatgtattttgcagtgtcaatccatttagacttataggatctggattgtcaatttg |
693 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2344418 |
gttagcttaaacattaaatgtcataagaatcctttctcacaattcatgtatttcgcagtgtcaatccatttaaacttataggatccggattgtcaatttg |
2344517 |
T |
|
| Q |
694 |
gacactagcaaccttcttctgtggtttttcttttaatttctggt |
737 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344518 |
gacactagcaaccttcttctgtggtttttcttttaatttctggt |
2344561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 423 - 588
Target Start/End: Original strand, 2336997 - 2337162
Alignment:
| Q |
423 |
tgcaggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctag |
522 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2336997 |
tgcaggggggattttaaattgaacaattttgaagatggagttttgtcatctgcttttatggttggacttctcgtggcttctccaatatttgcctctctag |
2337096 |
T |
|
| Q |
523 |
ctaagaggtaattaggatagccattcgtgttgcaatcagtttgaaacctattcatattattagata |
588 |
Q |
| |
|
|| |||||||||||| ||| |||||| |||| |||||| | |||||||||||| |||||||||||| |
|
|
| T |
2337097 |
ctcagaggtaattagaataaccattcatgttccaatcaatatgaaacctattcttattattagata |
2337162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 605 - 737
Target Start/End: Original strand, 2337536 - 2337668
Alignment:
| Q |
605 |
cattaaatgtcataagaatcctttctcacaattcatgtattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaa |
704 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||| || || | |
|
|
| T |
2337536 |
cattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcga |
2337635 |
T |
|
| Q |
705 |
ccttcttctgtggtttttcttttaatttctggt |
737 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| |
|
|
| T |
2337636 |
ccttcttttgcggtttttctttcaatttctggt |
2337668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 455 - 588
Target Start/End: Original strand, 2323964 - 2324097
Alignment:
| Q |
455 |
agatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttgtgtctctagctaagaggtaattaggatagccattcgtgttg |
554 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||||| | ||||||| ||||||||||| || |||||| |||| |
|
|
| T |
2323964 |
agatggagttttatcatctgcttttatgggtggacttcttgtggcttctccaatatttgcatttctagctcagaggtaattaatgtaaccattcatgttc |
2324063 |
T |
|
| Q |
555 |
caatcagtttgaaacctattcatattattagata |
588 |
Q |
| |
|
|||||| |||||||||||| || |||| |||| |
|
|
| T |
2324064 |
caatcaaagtgaaacctattcttagtattcgata |
2324097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 430 - 513
Target Start/End: Complemental strand, 36799414 - 36799331
Alignment:
| Q |
430 |
gggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
513 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| ||| | ||||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
36799414 |
gggattttaacttgaccaattttcaagatggagttctttcatctgcttttatggttggacttcttatagcttctccaatatttg |
36799331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 642 - 737
Target Start/End: Complemental strand, 36798802 - 36798707
Alignment:
| Q |
642 |
tattttgcagtgtcaatccatttagacttataggatctggattgtcaatttggacactagcaaccttcttctgtggtttttcttttaatttctggt |
737 |
Q |
| |
|
||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| | |||||||| | ||||||| ||||||| |||||||||| |
|
|
| T |
36798802 |
tattttgcagtgtaaacccctttagacttattggagttggattgtcagtttggactgttgcaaccttatgctgtggtctttctttcaatttctggt |
36798707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 425 - 513
Target Start/End: Complemental strand, 12969710 - 12969622
Alignment:
| Q |
425 |
caggtgggattttaagttgaacaattttgaagatggtgttttatcatctgattttatggttggacttctcatggcttctccaatatttg |
513 |
Q |
| |
|
|||| |||||||||| |||| |||||| ||||||||||||| ||||||| ||||||||||||||| | || ||||||||||| |||| |
|
|
| T |
12969710 |
caggggggattttaacttgagtaattttcaagatggtgttttgtcatctgcatttatggttggacttttaattgcttctccaatttttg |
12969622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University