View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_54 (Length: 300)
Name: NF11651_high_54
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 43830638 - 43830841
Alignment:
| Q |
6 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
105 |
Q |
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| T |
43830638 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
43830737 |
T |
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| Q |
106 |
gctgacaatgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
205 |
Q |
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| T |
43830738 |
gctgacaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
43830837 |
T |
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| Q |
206 |
atcc |
209 |
Q |
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|||| |
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| T |
43830838 |
atcc |
43830841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 43816422 - 43816614
Alignment:
| Q |
13 |
aatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctccagctgaca |
112 |
Q |
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|||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
43816422 |
aatccaacaatgaatgtactgattataactataacttcttcccattctcctgccaatgctgataactctcccattccaacagcaagtcctccagctgaga |
43816521 |
T |
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| Q |
113 |
atgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
205 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
43816522 |
atgtccctaatcctctgttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaag |
43816614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 43823385 - 43823569
Alignment:
| Q |
13 |
aatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctccagctgaca |
112 |
Q |
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|||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
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| T |
43823385 |
aatccaacaatgaatgtactgataatcactataacttcttcccattctccagccaatgctgataactctcccattcctacagcaagtcctccggctgaca |
43823484 |
T |
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| Q |
113 |
atgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagc |
198 |
Q |
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| T |
43823485 |
atgtccctaatcctctgttaaaccctctgttcagagttgctcctgcaaaatttcattgcattttgatca-gaaataaattgaaagc |
43823569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 43831567 - 43831657
Alignment:
| Q |
210 |
ttcatcaaaatggtttcaaatcaaaaccaatagttgtaatttcaaatcaagtgatcaacatacttcgtaatttctcatctacgacaaataa |
300 |
Q |
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| T |
43831567 |
ttcatcaaaatggtttcaaatcaaaaccaatagttctaatttcaaatcaagtgatcaacatacttcgtaatttctcatctacgaaaaataa |
43831657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 34804032 - 34804231
Alignment:
| Q |
6 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
105 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34804032 |
agcacagaatccaacaatgaatgtactactaataactataatttcttcccattcttcagccaatgctgataactctcccattccaacagcaagtcctcca |
34804131 |
T |
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| Q |
106 |
gctgacaatgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
205 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34804132 |
gctgagaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgtcaaattccattgcatttttatcatataataaattgaaagcattgaag |
34804231 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 4999223 - 4999422
Alignment:
| Q |
6 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
105 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
4999223 |
agcacagaatccaacaatgaatgtactactaataactataatttcttcccattctccagccaatgctgataactctcccattccaacagcaagtcttcca |
4999322 |
T |
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| Q |
106 |
gctgacaatgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
205 |
Q |
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||||| |||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4999323 |
gctgagaatgtccctaatactctgttaaaccccttgctcagagttgcccctgtcaaattccattgcatttttatcatataataaattgaaagcattgaag |
4999422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 31807294 - 31807256
Alignment:
| Q |
93 |
agcaagtcctccagctgacaatgtccctaatcctctgtt |
131 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |
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| T |
31807294 |
agcaagtcctccagctgataaagtccctaatcctctgtt |
31807256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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