View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_55 (Length: 298)
Name: NF11651_high_55
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 12243612 - 12243327
Alignment:
| Q |
1 |
tcactggtgctactttgatgctcacttcacgtcaaaaaggatattatagggattcttatgtccatgtggagtttaatgacatgccagcttattggtaagt |
100 |
Q |
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| T |
12243612 |
tcactggtgctactttgatgctcacttcacgtcaaaaaggatattatagggattcttatgtccatgtggagtttaatgacatgccagcttattggcaagt |
12243513 |
T |
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| Q |
101 |
gcaataacaaatttatatttaaatacattttaggttataaagatatgacacttttcaaaataaacatgatccggtgttggacatgcatcatgtctgatac |
200 |
Q |
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| T |
12243512 |
gcaataacaaatttatatttaaatacattttagattataaagatccgacacttttcgaattaaacatgattcgatgttggacatatatcatgcctgatac |
12243413 |
T |
|
| Q |
201 |
gacacatataattaaattgaactatgtga---nnnnnnnncttcaaattatta-tagtgcggcgtgtgtgtcttatctgtatttgt |
282 |
Q |
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||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12243412 |
gacacatataattaaattgaattatgtgatttttttttttctttaaattattagtagtgcggcgtgtgtgtcttatctgtatttgt |
12243327 |
T |
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