View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_67 (Length: 256)
Name: NF11651_high_67
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 28821901 - 28822119
Alignment:
| Q |
1 |
cactagtgtctgaaatctaagcctgcaattaatcaaataaagtattttttaggataaaaatttacattgtttatggtnnnnnnnnnnnnnnnnnngcatg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28821901 |
cactagtgtctgaaatctaagcctacaattaatcaaataaagtattttttaggataaaaatttacattgtttatggtaaaaaaaa----------gcatg |
28821990 |
T |
|
| Q |
101 |
cccaaagcgaatcatttcttgtgattaggtaaattattcattaaatcttgccagcattcctaggtagaaacatcctttgtaaattatattctagtatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
28821991 |
cccaaagcgaatcatttcttgtgattaggtaaattattcattaaatcttgccagcattcctaggtagaaacatcctttgtaaat--tattc---tatctc |
28822085 |
T |
|
| Q |
201 |
ttatgaannnnnnnataattattgaggtggtggt |
234 |
Q |
| |
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||||||| |||||||||||||||||||| |
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| T |
28822086 |
ttatgaatttttttataattattgaggtggtggt |
28822119 |
T |
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