View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_high_72 (Length: 250)

Name: NF11651_high_72
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_high_72
NF11651_high_72
[»] chr6 (3 HSPs)
chr6 (1-246)||(10117172-10117415)
chr6 (168-233)||(32296380-32296445)
chr6 (157-210)||(9177634-9177684)
[»] chr8 (3 HSPs)
chr8 (157-233)||(23490047-23490122)
chr8 (157-233)||(7154346-7154422)
chr8 (182-233)||(14867355-14867406)
[»] chr2 (8 HSPs)
chr2 (157-232)||(37794729-37794803)
chr2 (157-233)||(17989065-17989140)
chr2 (157-233)||(35016459-35016534)
chr2 (92-159)||(409818-409885)
chr2 (98-149)||(1399319-1399370)
chr2 (98-149)||(1403014-1403065)
chr2 (66-120)||(404557-404611)
chr2 (189-233)||(5428657-5428701)
[»] chr7 (7 HSPs)
chr7 (159-225)||(39653536-39653602)
chr7 (157-233)||(25635981-25636057)
chr7 (157-222)||(45435419-45435484)
chr7 (157-230)||(10493487-10493560)
chr7 (157-225)||(47363781-47363848)
chr7 (92-144)||(1446151-1446203)
chr7 (178-233)||(33049132-33049187)
[»] chr4 (7 HSPs)
chr4 (157-233)||(55606324-55606399)
chr4 (157-233)||(28146999-28147074)
chr4 (157-233)||(38411946-38412022)
chr4 (168-233)||(11440605-11440670)
chr4 (157-233)||(13198158-13198233)
chr4 (164-225)||(25968024-25968084)
chr4 (157-216)||(46308430-46308488)
[»] chr3 (5 HSPs)
chr3 (157-233)||(11783484-11783560)
chr3 (68-157)||(45810728-45810817)
chr3 (165-225)||(7299132-7299192)
chr3 (182-231)||(19596541-19596590)
chr3 (188-233)||(21926543-21926588)
[»] chr1 (6 HSPs)
chr1 (168-233)||(32617658-32617722)
chr1 (157-215)||(12990549-12990606)
chr1 (160-221)||(34664806-34664867)
chr1 (171-233)||(24699887-24699949)
chr1 (157-231)||(9457636-9457709)
chr1 (157-231)||(9461733-9461806)
[»] chr5 (5 HSPs)
chr5 (156-233)||(39426166-39426243)
chr5 (157-223)||(41283518-41283582)
chr5 (165-233)||(13424721-13424789)
chr5 (164-233)||(22927149-22927219)
chr5 (83-139)||(36198875-36198931)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 10117415 - 10117172
Alignment:
Q  1 gatatacacagtttctgtagttattatggcagaagcagcgaaaacttaagataattaaaaagagcatatattaccatgtgttattgttatattccgatga 100  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10117415 gatatacacagtttctgtagttattatgacagaagcagtgaaaacttaagacaattaaaaagagcatatattaccatgtgttattgttatattccgatga 10117316  T
Q  101 aagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcattatttggagttctaaactagataaggagataacattatgtaattt 200  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  10117315 aagcactttcaaatttggagtttctaggcatacaactattcaaggtttgtctcattatttggagttctaaactagataaggagat--tattatgtaattt 10117218  T
Q  201 atgatcaaatatgtaccaaaaatataattttcaattcatctctctc 246  Q
    |||||||||||||||| |||||||| ||||||||||||||| ||||    
T  10117217 atgatcaaatatgtactaaaaatatgattttcaattcatctatctc 10117172  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 32296445 - 32296380
Alignment:
Q  168 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||    
T  32296445 taaactatataaggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttca 32296380  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 9177684 - 9177634
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaat 210  Q
    ||||||||||||||||||| |   ||||||||||||||||||||||||||||||    
T  9177684 atttggagttctaaactaggt---gagataacattatgtaatttatgatcaaat 9177634  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 23490047 - 23490122
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  23490047 atttggagttctaaactagataaggagataac-ttatgtaatttatgatcaaatatgtacgaaaaatatgattttca 23490122  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 7154346 - 7154422
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||| ||||||| ||  |||||||||||||  |||||||||| ||||||||||||||||  |||||||| |||||||    
T  7154346 attttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatatgtattaaaaatatgattttca 7154422  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 14867355 - 14867406
Alignment:
Q  182 agataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||||| |||||||||||| |||||||||||| |||||| | |||||||    
T  14867355 agataacatcatgtaatttatgttcaaatatgtactaaaaatgtgattttca 14867406  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 37794729 - 37794803
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttc 232  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  37794729 atttggagttctaaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttc 37794803  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 17989065 - 17989140
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||    
T  17989065 atttggagttctaaactagataaggagataa-attatataatttatgatcaaatatgtactaaaaatatgattttca 17989140  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 35016459 - 35016534
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||    
T  35016459 atttggaattctaaactagataaggagataac-ttatataatttatgatcaaatatgtatcaaaaatatgattttca 35016534  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 409818 - 409885
Alignment:
Q  92 ttccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcattatt 159  Q
    ||||||||||| | |||||||||||||||||| || | |||||||||||  |||||||| || |||||    
T  409818 ttccgatgaaatcgctttcaaatttggagtttctacgtatacaactattggaggtttgtttcgttatt 409885  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 1399319 - 1399370
Alignment:
Q  98 tgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttg 149  Q
    ||||| ||||||||||| |||||||| || |||||||||||| |||||||||    
T  1399319 tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg 1399370  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 1403014 - 1403065
Alignment:
Q  98 tgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttg 149  Q
    ||||| ||||||||||| |||||||| || |||||||||||| |||||||||    
T  1403014 tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg 1403065  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 404557 - 404611
Alignment:
Q  66 atatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggag 120  Q
    |||||||||| | | |||||| ||| ||||||||||||||||||||||| |||||    
T  404557 atatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag 404611  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 5428701 - 5428657
Alignment:
Q  189 attatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||    
T  5428701 attatgtaatttatgatcaattatgtactaataatatgattttca 5428657  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 39653536 - 39653602
Alignment:
Q  159 ttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  39653536 ttggagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaatat 39653602  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 25635981 - 25636057
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||    
T  25635981 atttggagttctaaactagacaaggagataacattatgtaatttatgattaaatatgtactaaagatatgattttca 25636057  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 45435484 - 45435419
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaa 222  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  45435484 atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaa 45435419  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 10493487 - 10493560
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattt 230  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||| ||||    
T  10493487 atttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatgattt 10493560  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 47363781 - 47363848
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 225  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  47363781 atttgaagttctaaactagataaggagataac-ttatgtaatctatgatcaaatatgtactaaaaatat 47363848  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 1446203 - 1446151
Alignment:
Q  92 ttccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaag 144  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||||| ||||    
T  1446203 ttccgatgaaagcactttcaaatgtggagtttctacgcataaaactatacaag 1446151  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 33049187 - 33049132
Alignment:
Q  178 aaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||||||| || ||||||||||| |||||||||||| |||||| | |||||||    
T  33049187 aaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttca 33049132  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 55606324 - 55606399
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  55606324 atttggagttctaaactatataaggaaataac-ttatgtaatttatgatcaaatatgtactaaaaatataattttca 55606399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 28147074 - 28146999
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  28147074 atttggaattctaaattagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttca 28146999  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 38411946 - 38412022
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||  |||||||| |||||||    
T  38411946 atttggagttctaaactagataaggaaataacattatgtaatttataatcaagtatgtagtaaaaatatgattttca 38412022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 11440670 - 11440605
Alignment:
Q  168 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11440670 taaactatataagaagataacattatgtaatttatgatcaaatatgtactaaaaatatgattttca 11440605  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 13198158 - 13198233
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||    
T  13198158 atttggagttctaaattagataaggagataac-ttatgtaatttatgatcaaatatgcactaagaatatgattttca 13198233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 25968084 - 25968024
Alignment:
Q  164 gttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 225  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25968084 gttctaaactagataagaagataac-ttatgtaatttattatcaaatatgtaccaaaaatat 25968024  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 46308430 - 46308488
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtac 216  Q
    |||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  46308430 atttagagttctaaactaactaaggagataac-ttatgtaatttatgatcaaatatgtac 46308488  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 11783484 - 11783560
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||    
T  11783484 atttggagttctaaactagacaaggagacaacattgtgtaatttatgatcaaatatgtactaaaaatatgattttca 11783560  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 45810817 - 45810728
Alignment:
Q  68 atattaccatgtgttattgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcatta 157  Q
    ||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||| |  |||| ||||||| | |||||||||||||||    
T  45810817 atattactatctgttattgctattttccgatgaaagcactttcgaatttggagtttctccgcattcaactatccgaggtttgtctcatta 45810728  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 7299192 - 7299132
Alignment:
Q  165 ttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 225  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7299192 ttctaaagtagataaggagataacattatgtaatttatgattaaatatgtacttaaaatat 7299132  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 19596541 - 19596590
Alignment:
Q  182 agataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 231  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||| |||||    
T  19596541 agataacattatgtaacttatgttcaaatttgtactaaaaatatgatttt 19596590  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 21926543 - 21926588
Alignment:
Q  188 cattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||    
T  21926543 cattatgtaatttatgattaaatatgtactgaaaatatgattttca 21926588  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 32617658 - 32617722
Alignment:
Q  168 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  32617658 taaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttca 32617722  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 12990606 - 12990549
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgta 215  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12990606 atttgaagttctaaactagataaggagataa-attatgtaatttatgatcaaatatgta 12990549  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 34664867 - 34664806
Alignment:
Q  160 tggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaa 221  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  34664867 tggagttctaaactagataagaagataacgttatgtaatttatgatcaaatacgtactaaaa 34664806  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 24699887 - 24699949
Alignment:
Q  171 actagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    |||||||||  ||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||    
T  24699887 actagataaaaagataacattatgtaatatattatcaaatatatacgaaaaatataattttca 24699949  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 9457709 - 9457636
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 231  Q
    |||| ||||||||||| || |||||||||||| | | |||||||||||||| ||||||| ||||||||| |||||    
T  9457709 attttgagttctaaacaaggtaaggagataacttga-gtaatttatgatcagatatgtatcaaaaatatgatttt 9457636  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 9461806 - 9461733
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 231  Q
    |||| ||||||||||| || |||||||||||| | | |||||||||||||| ||||||| ||||||||| |||||    
T  9461806 attttgagttctaaacaaggtaaggagataacttga-gtaatttatgatcagatatgtatcaaaaatatgatttt 9461733  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 39426166 - 39426243
Alignment:
Q  156 tatttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaa-atataattttca 233  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||    
T  39426166 tatttgga-ttctaaactatataaggagatgacattatgtaatttatgatcaaatatgtactaaaatatatgattttca 39426243  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 41283582 - 41283518
Alignment:
Q  157 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaat 223  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||| || ||||| ||||||    
T  41283582 atttgaagttctaaactagataaggagataac-ttat-taatttatgatcagatttgtactaaaaat 41283518  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 13424721 - 13424789
Alignment:
Q  165 ttctaaactagat-aaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 233  Q
    ||||||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||| |||||||    
T  13424721 ttctaaaatagattaaggagataac-ttacgtgatttatgatcaaatatgtactaaaaatattattttca 13424789  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 22927149 - 22927219
Alignment:
Q  164 gttctaaactagataaggagataacattatgtaatttatgatcaaa--tatgtaccaaaaatataattttca 233  Q
    ||||||||||||| || ||||||||| ||||| |||||||||||||  | ||||| |||||||| |||||||    
T  22927149 gttctaaactagacaatgagataaca-tatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttca 22927219  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 36198875 - 36198931
Alignment:
Q  83 attgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactat 139  Q
    ||||| ||||||| |||||||||||||  |||| ||||||| |||| ||||||||||    
T  36198875 attgtgatattccaatgaaagcactttttaattcggagtttctaagaatacaactat 36198931  T

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