View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_high_77 (Length: 241)
Name: NF11651_high_77
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_77 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28272226 - 28272463
Alignment:
| Q |
1 |
ttcactcaatgactaataactagtcgaaatgaaatgctattgcttggtttgtttcttgcttcaccgctacactatctatcaaaatggccattgggtttat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28272226 |
ttcactcaatgactaataactagttgaaatgaaatgctattgcttggtttgtttcttgcttcaccgctacactatctatcaaaatggccattgggtttat |
28272325 |
T |
|
| Q |
101 |
ataaacaacaaaaaatttcattaagcaatcgcacgtgagtgagttggaagcacgcgcgaacaagacaactattgttgtggggtctacacaatgtccttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28272326 |
ataaacaacaaaaaatttcattaagcaatcgcacgtgagtgagttggaagcacgcgcgaacaagacaactattgttgtggggtctacacaatgtccttgt |
28272425 |
T |
|
| Q |
201 |
gttctgttccgcctaatcaacatggtcacaacattctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28272426 |
gttctgttccgcctaatcaacatggtcacaacattctt |
28272463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University