View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_79 (Length: 240)
Name: NF11651_high_79
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_79 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 43832049 - 43831827
Alignment:
| Q |
18 |
cttagctgagaatgaagagaaacttctctccgtgaaggttgatcatgattattctcatataggaatttgtttgaatgaagaacaagtggaaacatcaatg |
117 |
Q |
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| T |
43832049 |
cttagctgaggatgaagagaaacttctctccgtgaaggttgatcatgattattctcatataggaatttgtttgaatgaagaacaagtggaaacatcaatg |
43831950 |
T |
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| Q |
118 |
atgatgaagtgtttgaagacaatagagggtattgctaacaaggcatgtcaaatgggtcggtctgatccaaggaagattatatttgctgcaaaaatgggtc |
217 |
Q |
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| T |
43831949 |
atgatgaagtgtttgaagacaatggagggtattgctaacaaggcatgtcaaatgggtcggtctgatccaaggaagattatatttgccgcaaaaatgggtc |
43831850 |
T |
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| Q |
218 |
ttgctttgactattatctccctt |
240 |
Q |
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| T |
43831849 |
ttgctttgactattatctccctt |
43831827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 43816996 - 43816923
Alignment:
| Q |
167 |
aaatgggtcggtctgatccaaggaagattatatttgctgcaaaaatgggtcttgctttgactattatctccctt |
240 |
Q |
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| T |
43816996 |
aaatgggtcgttctgatccaagaaagatcatttttgctgctaaaatgggtcttgctttgactattatctccctt |
43816923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 43824932 - 43824859
Alignment:
| Q |
167 |
aaatgggtcggtctgatccaaggaagattatatttgctgcaaaaatgggtcttgctttgactattatctccctt |
240 |
Q |
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| T |
43824932 |
aaatgggtcgttctgatccaaggaagatcattttcgctgctaaaatgggtcttgctttggcccttatctccctt |
43824859 |
T |
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