View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_high_8 (Length: 652)
Name: NF11651_high_8
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 32855684 - 32855953
Alignment:
| Q |
22 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctgct |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32855684 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaatcaagagaagagttaccctgct |
32855783 |
T |
|
| Q |
122 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32855784 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
32855883 |
T |
|
| Q |
222 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32855884 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
32855953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 325 - 637
Target Start/End: Original strand, 32855987 - 32856299
Alignment:
| Q |
325 |
ccctttgaactaagataatatctccagctggaagnnnnnnnnnnnnnnnntatcttcaaagcactgtaactgttctgcactctgtggctactaccatcac |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32855987 |
ccctttgaactaagataatatctccagctggaagaaaaacaaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctactaccgtcac |
32856086 |
T |
|
| Q |
425 |
ccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32856087 |
ccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattt |
32856186 |
T |
|
| Q |
525 |
tccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgtggacaaaga |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32856187 |
tccccaaattagaaaccacggatgagagagggttggatagctcttgctttgagttaagagagaaagagttgggggttctgggttcgaacgtggacagaga |
32856286 |
T |
|
| Q |
625 |
aatagatctaaat |
637 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32856287 |
aatagatctaaat |
32856299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 32850285 - 32850489
Alignment:
| Q |
41 |
tggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctg--------ctctacatgctca |
132 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
32850285 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaattgagagaagagttaccctgctctacgcctctacatgctca |
32850384 |
T |
|
| Q |
133 |
aatcatcattagtcattctgatac--------------tcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaa |
218 |
Q |
| |
|
| |||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||||| || ||| |||||||| |
|
|
| T |
32850385 |
a---atcattagtcatgctgatacaactttagggattatcaggtcctttccagctgaaaataccaactgctacctgttggggttgctaaaagttactaag |
32850481 |
T |
|
| Q |
219 |
tgcaacaa |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
32850482 |
tgcaacaa |
32850489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 514
Target Start/End: Original strand, 32850670 - 32850766
Alignment:
| Q |
413 |
tactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttct |
512 |
Q |
| |
|
||||||| ||||| | |||||||||| |||||| || | |||||||||| |||||||||||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
32850670 |
tactaccgtcacctagtaaatcatctatctttgcaaggtaatcacacttc-----ctgcacaatttatgcagaaacagctacactttttcatctatttct |
32850764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 32850520 - 32850561
Alignment:
| Q |
249 |
gtgcaagaccacatctcccacgcttgtagttttatttttccc |
290 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
32850520 |
gtgcaagaccccatctcccacgattgtagttttatttttccc |
32850561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 32850592 - 32850625
Alignment:
| Q |
325 |
ccctttgaactaagataatatctccagctggaag |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32850592 |
ccctttgaactaagataatatctccagctggaag |
32850625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University