View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_high_82 (Length: 240)

Name: NF11651_high_82
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_high_82
NF11651_high_82
[»] chr1 (3 HSPs)
chr1 (137-223)||(38235262-38235348)
chr1 (1-132)||(38233549-38233680)
chr1 (3-178)||(5464435-5464610)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 38235262 - 38235348
Alignment:
Q  137 attattttatatatgacaaatattaggacctatcataatcaaaatggaaatttaaccggtgtaagtactggttcaaggtttaatggt 223  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38235262 attattttatatatgacaaatattatgacctatcataatcaaaatggaaatttaaccagtgtaagtactggttcaaggtttaatggt 38235348  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38233549 - 38233680
Alignment:
Q  1 cctccaaaccgttcttcttgtgtgaacaaatttcttacattgacaaatgtcacatggatgtttaggaaaactaaagtagtagtcacaaatnnnnnnnnnn 100  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||              
T  38233549 cctccaaatcgttcttcttatgtggacaaatttcttacatcgacaaatgtcacatggatgtttaggaaaactaaagtagtagttacaaataaaaacaaaa 38233648  T
Q  101 nnttttgaattcataatttcatatagaatcct 132  Q
      ||||||||||||||||||||||||||||||    
T  38233649 aattttgaattcataatttcatatagaatcct 38233680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 5464435 - 5464610
Alignment:
Q  3 tccaaaccgttcttcttgtgtgaacaaatttcttacattgacaaatgtcacatggatgtttaggaaaactaaagta---gtagtcacaaatnnnnnnnnn 99  Q
    |||||| | |||||||  |||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||   ||||||||||||             
T  5464435 tccaaatctttcttctcatgtggacaaattgcttacattgacaaatgtcacatggatgtttagaaaagctaaattattagtagtcacaaataaaaaaaaa 5464534  T
Q  100 nnnttttgaattcataatttcatatagaatcctatcgattattttatatatgacaaatattaggacctatcataatcaa 178  Q
        ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  5464535 a---tttgacttcataatttcatatagaatcctatcaattattttatatatgacaaatattagcacctatcataatcaa 5464610  T

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