View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_89 (Length: 230)
Name: NF11651_high_89
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_89 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 27243674 - 27243478
Alignment:
| Q |
11 |
gagagagatgaacaagtcgaacttggaggagaagagcgttgatacaagaggtgggtgatggaaccaacaacatggataggagaagagatgagacaaaatt |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
27243674 |
gagagagaagaacaagtcgaacttggaggagaagagcgttgatacaagaggtgggtgatggaactatcaacatggataagagaagagatgagacaaaatt |
27243575 |
T |
|
| Q |
111 |
gtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccatcggtgagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||| |
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| T |
27243574 |
gtatgcggaaagatatagatgttcttaattttgtttgcaataaatatgatccattgattaaattcaactgtaatttcttcgtggtccaccggtgagg |
27243478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 27255249 - 27255053
Alignment:
| Q |
11 |
gagagagatgaacaagtcgaacttggaggagaagagcgttgatacaagaggtgggtgatggaaccaacaacatggataggagaagagatgagacaaaatt |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
27255249 |
gagagagaagaacaagtcgaacttggaggagaagagcgttgatacaagaggtgggtgatggaactatcaacatggataagagaagagatgagacaaaatt |
27255150 |
T |
|
| Q |
111 |
gtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccatcggtgagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||| |
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| T |
27255149 |
gtatgcggaaagatatagatgttcttaattttgtttgcaataaatatgatccattgattaaattcaactgtaatttcttcgtggtccaccggtgagg |
27255053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 42094706 - 42094760
Alignment:
| Q |
153 |
aatatgatccattgattaaatctaaccgtaatatcttcgtggtccatcggtgagg |
207 |
Q |
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|||||||||||||||||||||| ||| ||||| ||||| || | ||||||||||| |
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| T |
42094706 |
aatatgatccattgattaaatccaactgtaatttcttcatgcttcatcggtgagg |
42094760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 1053802 - 1053986
Alignment:
| Q |
11 |
gagagagatgaacaagtcgaacttggaggagaagagcgttgatacaagaggtgggtgatggaaccaacaacatggataggagaagagatgagacaaaatt |
110 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1053802 |
gagagagaagaacaagcagaacttggaggagaagagcgttgatacaagaggtgggtgatggaactaacaacatggataggagaagagatgagacaaaatt |
1053901 |
T |
|
| Q |
111 |
gtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |
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| T |
1053902 |
gtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaattcaaccgtaatttcttcatggt |
1053986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 13925033 - 13924825
Alignment:
| Q |
15 |
gagatgaacaagtcgaacttggaggagaagagcgttgatacaagag---------gtgggtgatggaaccaacaacatggataggagaagagatgagaca |
105 |
Q |
| |
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|||| ||||| ||| |||||||||||||||||||| |||||||||| ||||||| || ||| ||||||||||||||||||| |||||||||| |
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| T |
13925033 |
gagaagaacatgtcaaacttggaggagaagagcgtggatacaagagaaatgaagggtgggtgttgaaactaacaacatggataggagaaaagatgagaca |
13924934 |
T |
|
| Q |
106 |
-------aaattgtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtcca |
198 |
Q |
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||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||| | | ||||||||||| |
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| T |
13924933 |
tgtgacaaaattgtatttggaaacatgtagatgttcctaattttgtttccaacaaatatgatgcattgattaaattcaaccgtacttttttcgtggtcca |
13924834 |
T |
|
| Q |
199 |
tcggtgagg |
207 |
Q |
| |
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|||||||| |
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| T |
13924833 |
ccggtgagg |
13924825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 13925611 - 13925665
Alignment:
| Q |
153 |
aatatgatccattgattaaatctaaccgtaatatcttcgtggtccatcggtgagg |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||||||| |||||||| |
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| T |
13925611 |
aatatgatccattgattagatctaaccgtaatttctttgtggtccaccggtgagg |
13925665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 4059858 - 4060064
Alignment:
| Q |
15 |
gagatgaacaagtcgaacttggaggagaagagcgttgatacaagag---------gtgggtgatggaaccaacaacatggataggagaagagatga---- |
101 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||| |||||||||| ||||||| || ||| |||||||||||||| |||| |||||| |
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| T |
4059858 |
gagaagaacatgtcaaacttggaggagaagagcgtggatacaagagaaacgaagggtgggtgttgaaactaacaacatggatagaagaaaagatgagaca |
4059957 |
T |
|
| Q |
102 |
---gacaaaattgtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtcca |
198 |
Q |
| |
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|||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||| ||||||||||||| || |||| | ||||||||||||| |
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| T |
4059958 |
tgagacaaaattgtatgtggaaacatgtagatgttcctaattttgtttccaacaaatatgatgcattgattaaatccaatcgtactttcttcgtggtcca |
4060057 |
T |
|
| Q |
199 |
tcggtga |
205 |
Q |
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|
|||||| |
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|
| T |
4060058 |
ccggtga |
4060064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 4058956 - 4058906
Alignment:
| Q |
157 |
tgatccattgattaaatctaaccgtaatatcttcgtggtccatcggtgagg |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||||||| || ||||| |
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| T |
4058956 |
tgatccattgattagatctaaccgtaatttctttgtggtccaccgatgagg |
4058906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 8475 - 8379
Alignment:
| Q |
109 |
ttgtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtccatcggtgagg |
207 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||| || |||| |||||||| | |||||| |
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| T |
8475 |
ttgtatgtggaaacatgtagatgttcttaattttgtttccaacaaatatgatgcattga-taaatccaaccgt-atttctttgtggtccaccagtgagg |
8379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 33087373 - 33087482
Alignment:
| Q |
98 |
atgagacaaaattgtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtcc |
197 |
Q |
| |
|
||||||||||||||| || || ||| | |||||| ||| | |||| ||| ||||||||||||||||||||||||| ||| ||||| ||||| || | | |
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| T |
33087373 |
atgagacaaaattgtgtgtgggaaggtgtagatgctctcatttttatttttgacaaatatgatccattgattaaatccaactgtaatttcttcatgcttc |
33087472 |
T |
|
| Q |
198 |
atcggtgagg |
207 |
Q |
| |
|
| |||||||| |
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| T |
33087473 |
accggtgagg |
33087482 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 47571846 - 47571955
Alignment:
| Q |
98 |
atgagacaaaattgtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatccattgattaaatctaaccgtaatatcttcgtggtcc |
197 |
Q |
| |
|
||||||||||||||| || || ||| | ||||| ||| | |||| ||| ||||||||||||||||| |||||||| ||| ||||| ||||| || | | |
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| T |
47571846 |
atgagacaaaattgtgtgtgggaaggtgtagatactctcatttttatttttaacaaatatgatccattaattaaatccaactgtaatttcttcatgtttc |
47571945 |
T |
|
| Q |
198 |
atcggtgagg |
207 |
Q |
| |
|
| |||||||| |
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| T |
47571946 |
accggtgagg |
47571955 |
T |
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