View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_high_96 (Length: 217)
Name: NF11651_high_96
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 40635803 - 40635997
Alignment:
| Q |
18 |
ggaaagagctcactctcaagtgttaaaaccgattcttcagctttgttagattggaaaaccaaaagtgtatcagctgaacagacaaaggaagaagaacaat |
117 |
Q |
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| T |
40635803 |
ggaaagagctcactctcaagtgttaaaaccgattcttcagctttgttagattggaaaaccaaaagtgtatcagctgaacagacaaaggaagaaggacaat |
40635902 |
T |
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| Q |
118 |
tacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcctttgcttct |
212 |
Q |
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| T |
40635903 |
tacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttct |
40635997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 40647766 - 40647955
Alignment:
| Q |
18 |
ggaaagagctcactctcaagtgttaaaaccgattcttcagctttgttagattggaaaaccaaaagtgtatcagctgaacagacaaaggaagaagaacaat |
117 |
Q |
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| T |
40647766 |
ggaaagagctcactctcaagtgttaaaaccgattcttcagctttgttagattggaaaaccaaaagtgtatcagctgaacagacaatggaagccgaacaat |
40647865 |
T |
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| Q |
118 |
tacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcctttg |
207 |
Q |
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| T |
40647866 |
tacaagaacgtaaggcattgagaagccagatgagtaaaattgttattactagtcttgagttttctgaagcattgccttttgctgcttttg |
40647955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 16861967 - 16862031
Alignment:
| Q |
148 |
tgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcctttgcttct |
212 |
Q |
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| T |
16861967 |
tgagtaaaatggctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttct |
16862031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 4780199 - 4780134
Alignment:
| Q |
143 |
ccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcctttgc |
208 |
Q |
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| T |
4780199 |
ccagttgagtaaaattgctatcactagtcttgaattctctgaggcacttccttttgctgcttttgc |
4780134 |
T |
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