View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_high_97 (Length: 216)
Name: NF11651_high_97
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_high_97 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 47285372 - 47285463
Alignment:
| Q |
17 |
acatttatgttcacaattactatctatgcagtatatagttacagattcattcaatcacttacaccaactcacacgcaacacaatacaattat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285372 |
acatttatgttcacaattactatctatgcagtatatagtcacagattcattcaatcacttacaccaactcacacgcaacacaatacaattat |
47285463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 47285521 - 47285556
Alignment:
| Q |
166 |
tgctgcaccacttcaaattctctaccactgtctatg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285521 |
tgctgcaccacttcaaattctctaccactgtctatg |
47285556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University