View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11651_low_100 (Length: 214)
Name: NF11651_low_100
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_100 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 51753659 - 51753840
Alignment:
| Q |
13 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataa |
112 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| || || || || ||||||||| ||||| |
|
|
| T |
51753659 |
atgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataa |
51753758 |
T |
|
| Q |
113 |
atactttctctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttggtcc |
194 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51753759 |
acactttttctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttggtcc |
51753840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 51766426 - 51766507
Alignment:
| Q |
13 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttg |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51766426 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttg |
51766507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 12196175 - 12196353
Alignment:
| Q |
13 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataa |
112 |
Q |
| |
|
|||||||| ||||| |||| | |||| ||||| |||||||| ||||| ||||||||||| | ||| |||| || || ||| || |||| |||||||| | |
|
|
| T |
12196175 |
atgaagagtaggcctgctagaggaccagatgttgttgatagataacattgagatgcttttagtagcctctctccatcttttacactaaatagttgcatga |
12196274 |
T |
|
| Q |
113 |
atactttctctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttgg |
191 |
Q |
| |
|
| || || || ||||| ||||| ||||||||||| ||||| || |||| || ||||| |||||||| ||||| ||||| |
|
|
| T |
12196275 |
acaccttttccactcctccaacttgaagaattctagctcctaagctcagctttcctttcactgtatcggttatgtttgg |
12196353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University