View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_11 (Length: 647)
Name: NF11651_low_11
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 168 - 455
Target Start/End: Original strand, 30797325 - 30797629
Alignment:
| Q |
168 |
aaatatatgcttcttatagcgaaacatttcctcccgaatacattacagactgacttgtattatgtaactgcatctttagtggagcctcttattttttatc |
267 |
Q |
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| T |
30797325 |
aaatatatgtttcttatagcgaaacatttcctcccgaatgcatcac-gactgacttgtattatgtaactgcatctttagtggactctcttattttttatc |
30797423 |
T |
|
| Q |
268 |
caatagcccatgttgtctgccaaaggaaatctaagtgtgcaacaacttcgtgaat------------------cccttgaaatagtactgctgtcaagaa |
349 |
Q |
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| T |
30797424 |
caatagcctatgttgtctgccaaaggaaatctaagtgtgcaacaacttcgtgaattgcttgctataagtttttcccttgaaatagtactgctgtcaagaa |
30797523 |
T |
|
| Q |
350 |
aaaggtctattcttcaaacaaaatgtgagttttccttaccctcttctttatttccatttttccgtgctttttacattggcgacaatgcccaattgggggt |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30797524 |
aaaggtctattcttcaaacaaaatgtgagttttccttaccctcttctttatttccatttttccgtgctttttacattggcgacaatgcacaattgggggt |
30797623 |
T |
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| Q |
450 |
tcatca |
455 |
Q |
| |
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|||||| |
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| T |
30797624 |
tcatca |
30797629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 517 - 640
Target Start/End: Original strand, 30797690 - 30797812
Alignment:
| Q |
517 |
aagcaaaagttgtcatgcttatccatgataaaacctttttgttttaaacatctagacaatagaatttttgtttcttttgtatgtgcgaataaagggaaat |
616 |
Q |
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| T |
30797690 |
aagcaaaagttatcatgcttatccatgataaaacctttttgatttaaacatctagacaatagaa-ttttgtttcttttgtatgtgtgaataaagggaaat |
30797788 |
T |
|
| Q |
617 |
taggcaaacatgtcattcatctct |
640 |
Q |
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|||||||||||||||||||||||| |
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| T |
30797789 |
taggcaaacatgtcattcatctct |
30797812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 49904516 - 49904663
Alignment:
| Q |
174 |
atgcttcttatagcgaaacatttcctcccgaatacattacagactgacttgtattatgtaactgcatctttagtggagcctctta-ttttttatccaata |
272 |
Q |
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|||||||||| | ||||||| |||||||||||| ||| | || || |||||||| |||||||||||||||||||| ||||||| |||||||| ||| | |
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| T |
49904516 |
atgcttcttacaacgaaacacttcctcccgaatgcatccc-gatggagttgtattaggtaactgcatctttagtggaccctcttatttttttatacaaca |
49904614 |
T |
|
| Q |
273 |
gcccatgttgtctgccaaaggaaatctaagtgtgcaacaacttcgtgaa |
321 |
Q |
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|||||||||||||||| |||| ||||||| ||||| | | |||||||| |
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| T |
49904615 |
tcccatgttgtctgccataggagatctaagcgtgcagctaattcgtgaa |
49904663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 5945405 - 5945437
Alignment:
| Q |
174 |
atgcttcttatagcgaaacatttcctcccgaat |
206 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
5945405 |
atgcttcctatagcgaaacatttcctcccgaat |
5945437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 1207331 - 1207260
Alignment:
| Q |
230 |
tgtaactgcatctttagtggagcctcttattttttatccaatagcccatgttgtctgccaaaggaaatctaa |
301 |
Q |
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||||| ||||||||||||||| |||| | ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
1207331 |
tgtaattgcatctttagtggaccctccttatttttatccaacagtccatgttgtctgccaaaggaaatctaa |
1207260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 627
Target Start/End: Original strand, 31866113 - 31866203
Alignment:
| Q |
536 |
tatccatgataaaacctttttgttttaaacatcta-gacaatagaatttttgtttcttttgtatgtgcgaataaagggaaattaggcaaacat |
627 |
Q |
| |
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|||||||| ||||||||||||||| |||| ||||| |||| |||| ||| ||||| ||||||||||| ||||| ||||||| ||||||||||| |
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| T |
31866113 |
tatccatgctaaaacctttttgttataaaaatctaagaca-taga-tttatgttttttttgtatgtgagaatagagggaaaataggcaaacat |
31866203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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