View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_14 (Length: 626)
Name: NF11651_low_14
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 22 - 610
Target Start/End: Complemental strand, 29282401 - 29281814
Alignment:
| Q |
22 |
accataatggtcatattttctcataatataacggtttgtggcgtatccacaaccgcggccacagttcaaaacctttctatattattcaggtgctcttttg |
121 |
Q |
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| T |
29282401 |
accataatggtcatattttctcataatataacggtttgtggcgtatccacaactgcggccacagttcaaaacctttctatattattcaggtgctcttttg |
29282302 |
T |
|
| Q |
122 |
tctacttcacatatgtatatacataaatttagattgtcttgcggggcatgatttccacgcatttgagcgggtaacaagattttggagttattgaatcacg |
221 |
Q |
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| T |
29282301 |
tctacttcacatatgtatatacataa-tttagattgccttgtggggcatgatttccacgcatttgagtggttaacaagattttggagttattgaatcacg |
29282203 |
T |
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| Q |
222 |
atcagacaattccgatttcaacccaatttaaaagcatgaatgtctggaaatagtaaccgcacacaatctaaattcgtatatgcatgaagaattaaatatt |
321 |
Q |
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| T |
29282202 |
attagacaattccgatttcgacccaatttaaaagcatgaatgtgtggaaatagtaatcgcagacaatctaaattcgtatatgcatgaagaattaaatatt |
29282103 |
T |
|
| Q |
322 |
tatttaaagtaaaaaactaatccaaattgaacttaagaacacaaattgatttatgaggagtcatatatacaagggtattattcatgtataatgagacacc |
421 |
Q |
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| T |
29282102 |
tatttaaagtaaaaaactaatccaaattgaacttaagaacacaaattgatttatgaggagtcatatatacaagggtattattcatgtataatgagacacc |
29282003 |
T |
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| Q |
422 |
ttgaataaaaagaaagtgtataaagaaaatttgttaggtgaatgacatggatgattcataaaaatatgtttctttttcaattgaatttgtgaaagtgttt |
521 |
Q |
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| T |
29282002 |
ttgaataaaaagaaagtgtataaagaaaatttgttaggtgaatgacatggatgattcataaaaatatgtttccttttcaattgaatttgtgaaagtgttt |
29281903 |
T |
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| Q |
522 |
aaagttgtttaatgtttaatcagtgtttgttgccaaaattagattatgacaaccttttccctccccttactatttctcttactttttga |
610 |
Q |
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| T |
29281902 |
aaagttgtttaatgcttaatcagtgtttgttgccaaaattagattatgacaaccttttccctccccttactatttctcttactttttga |
29281814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 512
Target Start/End: Complemental strand, 3508382 - 3508299
Alignment:
| Q |
429 |
aaaagaaagtgtataaagaaaatttgttaggtgaatgacatggatgattcataaaaatatgtttctttttcaattgaatttgtg |
512 |
Q |
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| T |
3508382 |
aaaagaaagtgcaaaaataaaatttgttagatgaatggaatgcatgattcataaaactatgtttctttttcaattgtatttgtg |
3508299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 496
Target Start/End: Complemental strand, 3508529 - 3508482
Alignment:
| Q |
449 |
aatttgttaggtgaatgacatggatgattcataaaaatatgtttcttt |
496 |
Q |
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|||||| |||||||||||||||||||||||| || | ||||||||||| |
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| T |
3508529 |
aatttgataggtgaatgacatggatgattcaaaacactatgtttcttt |
3508482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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