View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_16 (Length: 584)
Name: NF11651_low_16
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 52767400 - 52766832
Alignment:
| Q |
1 |
acagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52767400 |
acagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctg |
52767301 |
T |
|
| Q |
101 |
ccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctatatagcttaggaggagtaatagcttcgctaataatcttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52767300 |
ccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagtaatagcttcgctaataatcttatc |
52767201 |
T |
|
| Q |
201 |
agtctcattttttaaccaatcatctagaactactacaaatcaaaatgatttgtatggatggcttgcagttgttggtttggccctatatattgcatttttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52767200 |
agtctcattttttaaccaatcatctagcactactacaaatcaaaatgatttgtatggatggcttgcggttgttggtttggccctatatattgcatttttc |
52767101 |
T |
|
| Q |
301 |
tcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcaggagtaccgaggaatgtgtggaggcatgtcagctactgtgaattgga |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52767100 |
tcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcaggagtaccgaggaatgtgtggagggatgtcagctactgtgaattgga |
52767001 |
T |
|
| Q |
401 |
tttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggactggtcctacattcttgcttcttgctattatagctgttatagcgtt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52767000 |
tttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggactggtcctacattcttgcttcttgctattatagctgttatagcgtt |
52766901 |
T |
|
| Q |
501 |
tttgtttgtggtctttttggttccagaaaccaaagggttgacattcgatgaagtggagttgttgtggag |
569 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
52766900 |
tttgtttgtggtttttttggttccagaaaccaaagggttgacatttgatgaagtggagttgttgtggag |
52766832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 52771355 - 52771180
Alignment:
| Q |
1 |
acagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| ||| | ||||||| ||||||||| |
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| T |
52771355 |
acagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatgctg |
52771256 |
T |
|
| Q |
101 |
ccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctatatagcttaggaggagt |
176 |
Q |
| |
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|||||| ||||||||||||||||| ||||| |||||||| |||| | |||||| || | ||||||||||||||| |
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|
| T |
52771255 |
tcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt |
52771180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 256 - 480
Target Start/End: Complemental strand, 52771109 - 52770885
Alignment:
| Q |
256 |
ggatggcttgcagttgttggtttggccctatatattgcatttttctcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatccgcagg |
355 |
Q |
| |
|
||||||||||||||| | |||||| || ||||| || |||||||| || |||||||| || |||||||||||| | ||||| || ||||||| | | |
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| T |
52771109 |
ggatggcttgcagttttgggtttgatactgtatatagcttttttctcccctgggatgggaccagtgccgtgggcaatgaactcagagatatatcctaaag |
52771010 |
T |
|
| Q |
356 |
agtaccgaggaatgtgtggaggcatgtcagctactgtgaattggatttcaaatttgattgtggctcagtcatttctttccattgcagaagctgcagggac |
455 |
Q |
| |
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| || ||||||| ||||| || ||||||||||||||| |||| |||| ||| | |||||| ||||| |||||||||| |||| |||||| |||||| |
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| T |
52771009 |
aatatagaggaatttgtggtggtatgtcagctactgtgtgttgggtttccaatctcattgtgtctcagacatttctttctgttgctgaagctttagggac |
52770910 |
T |
|
| Q |
456 |
tggtcctacattcttgcttcttgct |
480 |
Q |
| |
|
||||||||| |||||| |||||||| |
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| T |
52770909 |
tggtcctactttcttgattcttgct |
52770885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 46135671 - 46135632
Alignment:
| Q |
527 |
aaaccaaagggttgacattcgatgaagtggagttgttgtg |
566 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
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| T |
46135671 |
aaacctaagggttgacatttgatgaagtggagttgttgtg |
46135632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 392460 - 392614
Alignment:
| Q |
4 |
gtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctgccg |
103 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| || | ||| |||||||||||| || || ||||||||||||||| |||| |||| || |
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|
| T |
392460 |
gtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatagttgctggcatgaacgctgtcg |
392559 |
T |
|
| Q |
104 |
gaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccct |
158 |
Q |
| |
|
||||| ||||||| ||||||||||||||| | |||| ||||||||||||||||| |
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| T |
392560 |
gaacaattcttggcatttaccttattgacaacacagggcggaaaaaattagccct |
392614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 413
Target Start/End: Original strand, 392695 - 392857
Alignment:
| Q |
251 |
tgtatggatggcttgcagttgttggtttggccctatatattgcatttttctcgccagggatggggcctgtgccgtgggcagtaaactctgaagtatatcc |
350 |
Q |
| |
|
|||||||||||||||||||| | || | | ||| ||||||| || ||||||||||| |||||||| || || ||| | ||||||| || ||||||| |
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| T |
392695 |
tgtatggatggcttgcagttatcgggctaggcctttatattggtttcttctcgccaggaatggggccagttccatggactataaactcagagatatatcc |
392794 |
T |
|
| Q |
351 |
gcaggagtaccgaggaatgtgtggaggcatgtcagctactgtgaattggatttcaaatttgat |
413 |
Q |
| |
|
| || || ||||| || ||||| |||||| |||| || ||| |||||||||||||||||| |
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|
| T |
392795 |
tgaagaatatcgaggtatatgtgggggcatggcagcgaccgtgtgttggatttcaaatttgat |
392857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 38011316 - 38011183
Alignment:
| Q |
7 |
atgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatgctgccggaa |
106 |
Q |
| |
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||||||||||| || ||||| | ||||||||||| ||| | || ||| |||| ||||||| || |||||||| ||||||||| |||| ||||| |||| |
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| T |
38011316 |
atgtactacagccccacaatcattcaaatggctgggtttaattccaatcagttagctcttcttctatctctcatcgttgctggcatgaacgctgctggaa |
38011217 |
T |
|
| Q |
107 |
cagttcttggtatttaccttattgaccatgcagg |
140 |
Q |
| |
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|||||||||| ||||| || |||||||||||||| |
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|
| T |
38011216 |
cagttcttggcatttatctaattgaccatgcagg |
38011183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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