View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_17 (Length: 582)
Name: NF11651_low_17
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 563
Target Start/End: Complemental strand, 39296332 - 39295782
Alignment:
| Q |
13 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagag |
112 |
Q |
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| T |
39296332 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagag |
39296233 |
T |
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| Q |
113 |
aataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296232 |
aatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
39296133 |
T |
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| Q |
213 |
acaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagaatgttaccaatggagaaa |
312 |
Q |
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| T |
39296132 |
acaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatggagaaa |
39296033 |
T |
|
| Q |
313 |
agtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaacagtcctttgtaca |
412 |
Q |
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| T |
39296032 |
agtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaacagtcctttgtaca |
39295933 |
T |
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| Q |
413 |
ctgtgcaaccttgatccagcagaataatcgacaacctcaaattttttgttggtatgtcagactttggtagtacctcaactctctcttggttattttccat |
512 |
Q |
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| T |
39295932 |
ctgtgcaaccttgatccagcagaataatcgacaacctcgaattttttgttggtatgtcagactttggtagtacctcaactttctcttggttattttccat |
39295833 |
T |
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| Q |
513 |
gtcctgaatttcagctagaaattcatactcatcatcgtcagcatcaatgtt |
563 |
Q |
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| T |
39295832 |
gtcctgaacttgagctagaaattcatactcatcatcgtcagcatcaatgtt |
39295782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Complemental strand, 39289449 - 39288899
Alignment:
| Q |
16 |
agcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagag |
112 |
Q |
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||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| ||||||||||||| || |||| |
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| T |
39289449 |
agcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagag |
39289350 |
T |
|
| Q |
113 |
aataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
212 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39289349 |
aataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaac |
39289250 |
T |
|
| Q |
213 |
acaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagaatgttaccaatggagaaa |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289249 |
acaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaa |
39289150 |
T |
|
| Q |
313 |
agtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaacagtcctttgtaca |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
39289149 |
agtgtagctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaaccaagaatagtcctttgtaaa |
39289050 |
T |
|
| Q |
413 |
ctgtgcaaccttgatccagcagaataatcgacaacctcaaattttttgttggtatgtcagactttggtagtacctcaactctctcttggttattttccat |
512 |
Q |
| |
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||||| |||||||||| ||||||||||| |||||||| | || || ||||| || | ||||||||||||| |||| | |||||||||||||| || |
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| T |
39289049 |
ctgtgaaaccttgatctagcagaataatagacaaccttgacttcctttttggtggttctgtttttggtagtaccttaactttttcttggttattttctat |
39288950 |
T |
|
| Q |
513 |
gtcctgaatttcagctagaaattcatactcatcatcgtcagcatcaatgtt |
563 |
Q |
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||| |||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39288949 |
gtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgtt |
39288899 |
T |
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