View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11651_low_18 (Length: 580)

Name: NF11651_low_18
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11651_low_18
NF11651_low_18
[»] chr6 (9 HSPs)
chr6 (175-347)||(14694634-14694802)
chr6 (4-138)||(14700876-14701010)
chr6 (1-138)||(14694460-14694597)
chr6 (413-553)||(14694868-14695009)
chr6 (175-347)||(14701047-14701213)
chr6 (182-248)||(14694075-14694141)
chr6 (183-248)||(14700488-14700553)
chr6 (413-475)||(14701246-14701308)
chr6 (520-563)||(14701306-14701349)
[»] chr5 (2 HSPs)
chr5 (175-248)||(20523753-20523826)
chr5 (196-248)||(20523983-20524035)
[»] chr1 (1 HSPs)
chr1 (175-248)||(37239351-37239424)
[»] chr2 (2 HSPs)
chr2 (217-254)||(42801902-42801939)
chr2 (175-245)||(17769284-17769354)
[»] chr3 (1 HSPs)
chr3 (175-244)||(23091042-23091111)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 175 - 347
Target Start/End: Original strand, 14694634 - 14694802
Alignment:
Q  175 aaataatgtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctcttttatcactttttaatttacaaaca 274  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  14694634 aaatgatgtgtcatgtttttgttggttgtgactaaagatgacgtgttaggtgagagaccatacaagaatttttcttttatcactttttagtttacaaaca 14694733  T
Q  275 aaccaaccaacttgccaaaaccctatttagatcgatataaaaaatattttgatactactaatcaaatatcaaa 347  Q
        |||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  14694734 ----aaccaacttgccaaaaccgtatatagaacgatataaaaaatactttgatactactaatcaaatatcaaa 14694802  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 14700876 - 14701010
Alignment:
Q  4 atattgtttgaccgagcaaacttgggcacttttgaagtttcgaattcgttggtaatggagttttcgacaataatgactctaaactaaagtactatatcta 103  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14700876 atattgtttggccgagcgaacttgggcacttttgaagtttcgaattcgttggtaatggagttttcgacaacaatgactctaaactaaagtactatatcta 14700975  T
Q  104 tatggcggtgtattagtggaggaagagaaacaatg 138  Q
    ||||||  ||||| |||||||||||||||||||||    
T  14700976 tatggcactgtatcagtggaggaagagaaacaatg 14701010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14694460 - 14694597
Alignment:
Q  1 actatattgtttgaccgagcaaacttgggcacttttgaagtttcgaattcgttggtaatggagttttcgacaataatgactctaaactaaagtactatat 100  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14694460 actatattaattggccgagcaaacttgggcacttttgaagtttcgaattcgttggtaatggagttttcgacaacaatgactctaaactaaagtactatat 14694559  T
Q  101 ctatatggcggtgtattagtggaggaagagaaacaatg 138  Q
    |||||||||  ||||| |||||||||||||||||||||    
T  14694560 ctatatggcactgtatcagtggaggaagagaaacaatg 14694597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 413 - 553
Target Start/End: Original strand, 14694868 - 14695009
Alignment:
Q  413 atggatcgggttgcatttagat-gaaccacaactgacaataaaactctttacgggctatgttgatttaattgcatattataacaatcttccatgtggggc 511  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  14694868 atggatcgggttgcatttagatagaacaacagctgacaataaaactctttacaagctatgttgatttaattgcatattataacaatcttccatgtggggc 14694967  T
Q  512 tccatgtgtgaactaccgtaattaatataccatcaagccact 553  Q
     | |||||||||||||||||||||||||||||||| ||||||    
T  14694968 cctatgtgtgaactaccgtaattaatataccatcaggccact 14695009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 175 - 347
Target Start/End: Original strand, 14701047 - 14701213
Alignment:
Q  175 aaataatgtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctcttttatcactttttaatttacaaaca 274  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||||||||| ||| ||||      
T  14701047 aaatgatgtgtcatgtttttgttggttgtgactaaagatgacgtgttaggtgagagaccatgcaagaatttttc--ttatcactttttagtttgcaaa-- 14701142  T
Q  275 aaccaaccaacttgccaaaaccctatttagatcgatat-aaaaaatattttgatactactaatcaaatatcaaa 347  Q
        |||||||||||||||||||||| |||| |||||| |||||||| || |||||||||||||||||||||||    
T  14701143 ---aaaccaacttgccaaaaccctatatagaacgatataaaaaaatacttagatactactaatcaaatatcaaa 14701213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 14694141 - 14694075
Alignment:
Q  182 gtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctc 248  Q
    ||||| ||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||||    
T  14694141 gtgtcttgtttttgttggttgtgactaaagatgacctcttagataagagaccatgcaagaatttctc 14694075  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 14700553 - 14700488
Alignment:
Q  183 tgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctc 248  Q
    |||| |||||||||||||||| |||||||||| | | |||| | |||||||| |||||||||||||    
T  14700553 tgtcttgtttttgttggttgtcactaaagatgacctcttagataagagaccaagcaagaatttctc 14700488  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 14701246 - 14701308
Alignment:
Q  413 atggatcgggttgcatttagat-gaaccacaactgacaataaaactctttacgggctatgttga 475  Q
    ||||| ||||||||||| |||| ||||||||  ||||||||||||||||||| |||||||||||    
T  14701246 atggaacgggttgcatt-agatagaaccacagttgacaataaaactctttacaggctatgttga 14701308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 563
Target Start/End: Original strand, 14701306 - 14701349
Alignment:
Q  520 tgaactaccgtaattaatataccatcaagccacttgagttggtt 563  Q
    |||||||||||||||||||||||| || |||||||| |||||||    
T  14701306 tgaactaccgtaattaatataccaccaggccacttgggttggtt 14701349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 20523826 - 20523753
Alignment:
Q  175 aaataatgtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctc 248  Q
    |||| ||||||| | ||||  ||||||| ||||||| |||  ||||||||||||||||||||||||||||||||    
T  20523826 aaatgatgtgtcctattttcattggttgagactaaatatgaggtgttaggtgagagaccatgcaagaatttctc 20523753  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 20523983 - 20524035
Alignment:
Q  196 ttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctc 248  Q
    ||||||| ||||||| |||  ||||||||||| ||||||||||||||||||||    
T  20523983 ttggttgagactaaatatgaagtgttaggtgatagaccatgcaagaatttctc 20524035  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 37239424 - 37239351
Alignment:
Q  175 aaataatgtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatttctc 248  Q
    |||| ||||||| | ||||  ||||||| ||||||| |||  ||||||||||||||||||||||||||||||||    
T  37239424 aaatgatgtgtcctattttctttggttgagactaaatatgaggtgttaggtgagagaccatgcaagaatttctc 37239351  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 42801902 - 42801939
Alignment:
Q  217 gtgttaggtgagagaccatgcaagaatttctcttttat 254  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42801902 gtgttaggtgagagaccatgcaagaatttctctgttat 42801939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 17769354 - 17769284
Alignment:
Q  175 aaataatgtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaattt 245  Q
    |||| ||||||| | ||||  ||||||| || |||| |||  |||||||||||||||||||||||||||||    
T  17769354 aaatgatgtgtcctattttcattggttgagattaaatatgaggtgttaggtgagagaccatgcaagaattt 17769284  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 23091111 - 23091042
Alignment:
Q  175 aaataatgtgtcatgtttttgttggttgtgactaaagatggcgtgttaggtgagagaccatgcaagaatt 244  Q
    |||| ||||||| | ||||| ||| ||| ||||||| |||  |||||||||||||||| |||||||||||    
T  23091111 aaatgatgtgtcctatttttattgattgagactaaatatgaggtgttaggtgagagactatgcaagaatt 23091042  T

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