View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_2 (Length: 1050)
Name: NF11651_low_2
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 737; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 19 - 795
Target Start/End: Original strand, 35356023 - 35356799
Alignment:
| Q |
19 |
ctccaagtgacagtattggtgttgttgttgatgcttctgtgtttcacgagtcatttctagccggcggcattggtaagctatatgcttctgataagcgtgc |
118 |
Q |
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| T |
35356023 |
ctccaagtgacggtattggtgttgttgttgatgcttctgtgtttcacgagtcatttctagccggcggcattggtaagctatatgcttctgataagcgtgc |
35356122 |
T |
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| Q |
119 |
agaaatttaagcttgcattcatttgtggaaatccttactgcatgatatatcactgaannnnnnnngtatgctgcttcattattttagaaaataaacatgt |
218 |
Q |
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| T |
35356123 |
agaaatttaagcttgcattcatttgtggaaatccttactgcatgatatatcactgaattttttttgtatgctgcttcattattttagaaaataaacatgt |
35356222 |
T |
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| Q |
219 |
ggaaatccttactgttttagcaaaactgtttcagcaaaactgtttcttggtaacgttctcaaggaaggaactccaatttctatcaaccctcttgtgatat |
318 |
Q |
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| T |
35356223 |
ggaaatccttactgttttagcaaaactgtttcagcaaaactgtttcttggtaacgttctcaaggaaggaactccaatttctatcaaccctcttgtgatat |
35356322 |
T |
|
| Q |
319 |
gggcttgggcaggactccttatcaatgccatcaacagtattcccgctggagaaattgatggagggagaatttcttttgccatatggggaagaaaggtatc |
418 |
Q |
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| T |
35356323 |
gggcttgggcaggactccttatcaatgccatcaacagtattcccgctggagaaattgatggagggagaatttcttttgccatatggggaagaaaggtatc |
35356422 |
T |
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| Q |
419 |
acatttaataagtattattttgatcttgactcttaggtttggccaacggttgtttcatttgagataaaatcgatacttctgatcaattctactttaacca |
518 |
Q |
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| T |
35356423 |
acatttaataagtattattttgatcttgactcttaggtttggccaacggttgtttcatttgagataaaatcgatacttctgatcaattctactttaacca |
35356522 |
T |
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| Q |
519 |
aagtttaatgataatttgaattcaacgactcagtcatcacatttaataagtaataagtaaacataaaaagtgaaacatgatttgccggtttcttttttgg |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35356523 |
aagtttaatgataatttgaattcaacgactcagtcatcacatttaacaaataataagtaaacataaaaagtgaaacatgatttgccggtttcttttttgg |
35356622 |
T |
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| Q |
619 |
acggaaagacatctattttatttcattctcaataagagtcaaaatacgaataggatcatgactgaaaactcgagaacaagattgtgatgcagccgcccta |
718 |
Q |
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| T |
35356623 |
acagaaagacatctattttatttcattctcaataagagtcaaaatacgaataggatcatgactgaaaactcgagaacaagattgtgatgcagccgcccta |
35356722 |
T |
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| Q |
719 |
acaaggttatgagcaactccattgggttgcctctttagatacacaacattaatatgttgaaaaaagaagatatgtta |
795 |
Q |
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| T |
35356723 |
acaaggttatgagcaactccattgggttgcctctttagatacacaacattaatatgttgaaaaaagaagatatgtta |
35356799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 804 - 1033
Target Start/End: Original strand, 35356841 - 35357070
Alignment:
| Q |
804 |
cacttgagtatggttaatgccatccactgccattttagaatccaattcaaagatgacattatgcaattgtagttcatgtatccagatcattgcatgccaa |
903 |
Q |
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| T |
35356841 |
cacttgagtatggttaatgccatccactgccattttagaatccaattcaaagatgacatcatgcaattgtagttcatgtatccagatcattgcatgccaa |
35356940 |
T |
|
| Q |
904 |
agacccaaggcttcacctttatgaacatcaaaagcttggtatagtttattgttattgcttggataaactttcgatgctcattccagatgcatataccaaa |
1003 |
Q |
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| T |
35356941 |
agacccaaggcttcacctttatgaacatcaaaagcttggtatagtttattgttattgcttggataaactttcgatgctcattccagatgcatataccaaa |
35357040 |
T |
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| Q |
1004 |
gatatgtttcattttatccaaacagctctc |
1033 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35357041 |
gatatgtttcattttatccaaacagctctc |
35357070 |
T |
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