View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_20 (Length: 573)
Name: NF11651_low_20
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 10 - 557
Target Start/End: Original strand, 54218514 - 54219072
Alignment:
| Q |
10 |
ggacaactagctacatatatattcctttgttttagcctttagtaggaggaagggagatcttttgaaagacatgttatagaaatatctttgtcaatcttcg |
109 |
Q |
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| T |
54218514 |
ggacaactagctacatatatatt-------tttagcctttagtaggaggaagggagatcttttgaaagacatgttatagaaatatctttgtcaatcttcg |
54218606 |
T |
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| Q |
110 |
ttgccgtcaaggtgcaagaac---cattcttaacatataaatggtttcatttccagcaacaattgatcatttaccaatcaaacagaacatggtccgtacg |
206 |
Q |
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| T |
54218607 |
ttgccgtcaaggtgcaagaacaaccattcttaacatataaatagtttcatttccagcaacaattgatcatttatcaatcaaacagaacatggtccgtacg |
54218706 |
T |
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| Q |
207 |
ttttcgattctatcaaatacatgggaaaattaaataacaattgcaaaggaaaattttgtcaaaacatagaattcttgcatagtggaaaaactttttcttg |
306 |
Q |
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| T |
54218707 |
ttttcgattctatcaaatacatgggaaaattaaataacaattgcaaaggaaaattttgtcaaaacatagaattcttgcatagtagaaaaactttttcttg |
54218806 |
T |
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| Q |
307 |
tgcatctcaaagtaatttgcactcctgtgcttgagttgcatggaatcatactctagtttcagaataaagttagttgagtaatttgaattccttctcatac |
406 |
Q |
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| T |
54218807 |
tgcatctcaaagtagtttgcactcctgtgcttgagttgcatggaatcatactctagtttcagaataaagttagttgagtaatttgaattccttctcataa |
54218906 |
T |
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| Q |
407 |
agaacaaaatataagaaagg---------------aaaaaaggaaattcagtgaaatttgaagacgcaacttcccaggcctaaagattgcacgtggttcc |
491 |
Q |
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| T |
54218907 |
agaacaaaatataagaaaggaaaaaaaaaaaaaaaaaaaaaggaaattcagtgaaatttgaagacgcaacttcccaggcctaaagattgcacgtggttcc |
54219006 |
T |
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| Q |
492 |
tcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatctcctcta |
557 |
Q |
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| T |
54219007 |
tcacatcagtcagcttcttcaaatttgatgataaacctccggaacaaaatatgttgatcgcctcta |
54219072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 31217373 - 31217426
Alignment:
| Q |
458 |
caacttcccaggcctaaagattgcacgtggttcctcacatcagtcagcttcttc |
511 |
Q |
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| T |
31217373 |
caacttcccatgcctaaagcttgcaattggttcctcacatcagccagcttcttc |
31217426 |
T |
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