View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_21 (Length: 561)
Name: NF11651_low_21
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_21 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 339 - 554
Target Start/End: Complemental strand, 16035202 - 16034987
Alignment:
| Q |
339 |
gtgtgcaggatttggcttggttgagttgatctacggtaagtgattattgctttgtgttaatgttagatctgaattgtgaagtaatcttgatgctgttgat |
438 |
Q |
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| T |
16035202 |
gtgtgcaggatttggcttggttgagttgatctacggtaagtgattattgctttgtgttaatgttagatctgaattgtgaagtaatcttgatgctgttgat |
16035103 |
T |
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| Q |
439 |
tgattaatcagcttgagattttgcagaattttgaatcatcgagtttggaaaagctcgtttccgcgttttctgaagatgaagcggcaacgtgacgacgttt |
538 |
Q |
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| T |
16035102 |
tgattaatcagcttgagattttgcagaattttgaatcatcgagtttggaaaagctcgtttccgcgttttctgaagatgaagcggcaacgtgacgacgttt |
16035003 |
T |
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| Q |
539 |
tcatgagttcatctca |
554 |
Q |
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| T |
16035002 |
tcatgagttcatctca |
16034987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 16035504 - 16035294
Alignment:
| Q |
37 |
tccttcgtgtttttcttcatcaattcaacgttgatatttctgaggaataatcacaaaggtnnnnnnnntatcttcaattcaactcattttctcagttaat |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16035504 |
tccttcgtgtttttcttcatcaattcaacgttgatatttctgaggaataatcacaaaggtaaaaaaaatatcttcaattcaactcattttctcagttaat |
16035405 |
T |
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| Q |
137 |
taaaattttccatcactttctctgattttctcggaaaattctgaacttcaaagacttcacgatcactcagtgtaaattttccttttcgaattcatggtta |
236 |
Q |
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| T |
16035404 |
taaaattttccatcactttctctgattttctcggaaaattctgaacttcaaagacttcacgatcactcagtgtaaattttccttttcgaattcatggtta |
16035305 |
T |
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| Q |
237 |
cgttgctttgc |
247 |
Q |
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| T |
16035304 |
cgttgctttgc |
16035294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 339 - 554
Target Start/End: Complemental strand, 12350 - 12137
Alignment:
| Q |
339 |
gtgtgcaggatttggcttggttgagttgatctacggtaagtgattattgctttgtgttaatgttagatctgaattgtgaagtaatcttgatgctgttgat |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |
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| T |
12350 |
gtgtgcaggatttggcttggttgagttgatctacggtaaatgattatttctttgtgttacggttagatctgaattgttaagtaatcttgatgcagttgat |
12251 |
T |
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| Q |
439 |
tgattaatcagcttgagattttgcagaattttgaatcatcgagtttggaaaagctcgtttccgcgttttctgaagatgaagcggcaacgtgacgacgttt |
538 |
Q |
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|||||| | ||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
12250 |
tgattacttagcttgatattttgcagaattttgaatcatcgagtttg--aaaacacgtttccgcgttctctgaagatgaagcggtcacgtgacgacgttt |
12153 |
T |
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| Q |
539 |
tcatgagttcatctca |
554 |
Q |
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|||||||||||||||| |
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| T |
12152 |
tcatgagttcatctca |
12137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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