View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11651_low_22 (Length: 532)
Name: NF11651_low_22
Description: NF11651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11651_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 6 - 514
Target Start/End: Original strand, 28036748 - 28037256
Alignment:
| Q |
6 |
agaagcagagactcttaacaaccattgaacatctccaagggaattttctaactgcattgaggttttgcgaaaggcggcggtgggaatgatggtgaagaga |
105 |
Q |
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| T |
28036748 |
agaagccgagactcttaacaaccattgaatatctccaagggaattttctaactgcattgaggttttgcgaaaggcggtggtgggaatgatggtgaagaga |
28036847 |
T |
|
| Q |
106 |
cgttttatgccgtttacacgacatttcatgactaatccaagggctttgtcgaggacttgttcagtgtcatcgatgattcgtcttgtgggacgttcatata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28036848 |
cgttttatgccgtttacacgacatttcatgactaatccaagggctttgtcgaggacttgttctgtgtcatcgatgattcgtcttgtgggacgttcatata |
28036947 |
T |
|
| Q |
206 |
ggtcattgctattccttgcagcttgtcgaagaaggcctgcgagtttttctgttttggtttttaattctagacattcttgtttgaaattttgtgcctcgtc |
305 |
Q |
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| T |
28036948 |
ggtcattgctattccttgcagcttgtcgaagaaggcctgcgagtttttctgttttggtttttaattctagacattcttgtttgaaattttgtgcctcgtc |
28037047 |
T |
|
| Q |
306 |
cgctgatttagatacctggtccgccatttgtatcggccgagccaggatctccttcacgatgctcgacatggtggcggtgatacgttgttattgttgttgt |
405 |
Q |
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| T |
28037048 |
cgctgatttagatacctggtcagccatttgtatcggccgagccaggatctccttcacgatgctcgacatggtggcggtgatacgttgttattgttgttgt |
28037147 |
T |
|
| Q |
406 |
tttttgtttatgcaaacttttagtattgagggaagcaatgtaatgtgtaaatgttttgttgtatgtggggccaaggaggttctggctgtgggcggtggtg |
505 |
Q |
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| T |
28037148 |
cttttgtttatgcaaacttttagtattgagggaagcaatgtaatgtgtaaatgttttgttgtatgtggggccaaggaggttctggctgtgggcggtggtg |
28037247 |
T |
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| Q |
506 |
ggaatgtgt |
514 |
Q |
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||||||||| |
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| T |
28037248 |
ggaatgtgt |
28037256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 8756284 - 8756206
Alignment:
| Q |
122 |
cacgacatttcatgactaatccaagggctttgtcgaggacttgttcagtgtcatcgatgattcgtcttgtgggacgttc |
200 |
Q |
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|||||||||| | ||||||| ||| ||||||||||| |||||||| || || |||||||| ||| |||| |||||||| |
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| T |
8756284 |
cacgacattttaggactaatgaaagtgctttgtcgagtacttgttctgtttcttcgatgatccgttttgttggacgttc |
8756206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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